Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2776 ATGGGAAACCAGAAGCAAAAGTGGACGCAGGAGGAGGAAGATGCACTTTTGGCCGGCGTACAGAAGCACGGCCCAGGGAAGTGGAAGAACATTCTGAAGGATCCTGAATTCGCTCCGTTTCTCACTCATCGCTCTAACATTGACCTCAAGGACAAATGGCGTAATTTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGGCTCCTAAAGCAAAAGCTATAGTTGCTGCTTCAGTTTCTAACAGCCAAAACTCTGCTCCTACTAAATTTAATGCACCTGCTGATACTGCAGGGGATGATCCACCAAACAACACCACACAGGATGGGAAAAATGTCCCAAGGTATCATACGATGATTTTTGAAGCCCTTTCAACCATAAAAGATTCAAATGGATGTGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGGAGGCTTGTTTCACAAGGAAAGCTTGAAAAGGTTCAGAATTGCTACAAGGTAAAGAAAGACAATTCATTGGCAGTTAAAACTCCTACACCCAAACAAAAAGACGTCAGGCAACGGATATCGCAATATACCACGGGAGGGTTGATGCCATCAGGGGAGACGGTGGAAGATGCAGCGAAAGCAGCTGCCTATAAAGTTGCTGATGCAGAGAACAAATCTTTCTTAGCTGCTGAAGCTGTCAAGGAGGCAGAGAGAATTGCAAAGATGGCTGAGGATACAGATTCTATGCTACAAATTATAAAAGAGATGTATGAAAAATGTTCTCGTGGTGAAATTGTTCTCTTGGCTTAG 837 43.37 MGNQKQKWTQEEEDALLAGVQKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTASQGSKEKSRAPKAKAIVAASVSNSQNSAPTKFNAPADTAGDDPPNNTTQDGKNVPRYHTMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRISQYTTGGLMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMYEKCSRGEIVLLA 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 87221088 87225282 + Tan0020266.1 Tan04g2776 751180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2776 278 Gene3D - 111 198 IPR036388 -
Tan04g2776 278 FunFam Telomere repeat-binding factor 1 2 58 - -
Tan04g2776 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Tan04g2776 278 SMART sant 4 59 IPR001005 -
Tan04g2776 278 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Tan04g2776 278 CDD SANT_TRF 6 56 - -
Tan04g2776 278 Pfam linker histone H1 and H5 family 116 175 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Tan04g2776 278 SMART h15plus2 112 177 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Tan04g2776 278 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Tan04g2776 278 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Tan04g2776 278 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 182 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Tan04g2776 278 MobiDBLite consensus disorder prediction 101 115 - -
Tan04g2776 278 FunFam Telomere repeat-binding factor 1 8 87 - -
Tan04g2776 278 SUPERFAMILY Winged helix DNA-binding domain 111 193 IPR036390 -
Tan04g2776 278 MobiDBLite consensus disorder prediction 81 115 - -
Tan04g2776 278 PANTHER SINGLE MYB HISTONE 4 1 275 IPR044597 GO:0003691(InterPro)
Tan04g2776 278 Gene3D - 8 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2776 Tan-Chr4:87221088 Tan01g2680 Tan-Chr1:45017407 3.20E-06 dispersed
Tan04g2776 Tan-Chr4:87221088 Tan04g2777 Tan-Chr4:87221088 2.30E-145 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27343 PF00538 Linker_histone 1.10E-10 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2776 K09422 - csv:101202785 488.419