Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2776 ATGGGAAACCAGAAGCAAAAGTGGACGCAGGAGGAGGAAGATGCACTTTTGGCCGGCGTACAGAAGCACGGCCCAGGGAAGTGGAAGAACATTCTGAAGGATCCTGAATTCGCTCCGTTTCTCACTCATCGCTCTAACATTGACCTCAAGGACAAATGGCGTAATTTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGGCTCCTAAAGCAAAAGCTATAGTTGCTGCTTCAGTTTCTAACAGCCAAAACTCTGCTCCTACTAAATTTAATGCACCTGCTGATACTGCAGGGGATGATCCACCAAACAACACCACACAGGATGGGAAAAATGTCCCAAGGTATCATACGATGATTTTTGAAGCCCTTTCAACCATAAAAGATTCAAATGGATGTGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGGAGGCTTGTTTCACAAGGAAAGCTTGAAAAGGTTCAGAATTGCTACAAGGTAAAGAAAGACAATTCATTGGCAGTTAAAACTCCTACACCCAAACAAAAAGACGTCAGGCAACGGATATCGCAATATACCACGGGAGGGTTGATGCCATCAGGGGAGACGGTGGAAGATGCAGCGAAAGCAGCTGCCTATAAAGTTGCTGATGCAGAGAACAAATCTTTCTTAGCTGCTGAAGCTGTCAAGGAGGCAGAGAGAATTGCAAAGATGGCTGAGGATACAGATTCTATGCTACAAATTATAAAAGAGATGTATGAAAAATGTTCTCGTGGTGAAATTGTTCTCTTGGCTTAG 837 43.37 MGNQKQKWTQEEEDALLAGVQKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTASQGSKEKSRAPKAKAIVAASVSNSQNSAPTKFNAPADTAGDDPPNNTTQDGKNVPRYHTMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRISQYTTGGLMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMYEKCSRGEIVLLA 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 87221088 87225282 + Tan0020266.1 Tan04g2776 751180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2776 278 Gene3D - 111 198 IPR036388 -
Tan04g2776 278 FunFam Telomere repeat-binding factor 1 2 58 - -
Tan04g2776 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Tan04g2776 278 SMART sant 4 59 IPR001005 -
Tan04g2776 278 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Tan04g2776 278 CDD SANT_TRF 6 56 - -
Tan04g2776 278 Pfam linker histone H1 and H5 family 116 175 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Tan04g2776 278 SMART h15plus2 112 177 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Tan04g2776 278 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Tan04g2776 278 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Tan04g2776 278 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 182 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Tan04g2776 278 MobiDBLite consensus disorder prediction 101 115 - -
Tan04g2776 278 FunFam Telomere repeat-binding factor 1 8 87 - -
Tan04g2776 278 SUPERFAMILY Winged helix DNA-binding domain 111 193 IPR036390 -
Tan04g2776 278 MobiDBLite consensus disorder prediction 81 115 - -
Tan04g2776 278 PANTHER SINGLE MYB HISTONE 4 1 275 IPR044597 GO:0003691(InterPro)
Tan04g2776 278 Gene3D - 8 87 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2776 K09422 - - csv:101202785 488.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2776 Tan-Chr4:87221088 Tan01g2680 Tan-Chr1:45017407 3.20E-06 dispersed
Tan04g2776 Tan-Chr4:87221088 Tan04g2777 Tan-Chr4:87221088 2.30E-145 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g0622 . 1 321 Single Myb Histone (SMH) Gene Family AT1G49950 58.4 1.2e-70 264.2
Tan01g0621 . 1 321 Single Myb Histone (SMH) Gene Family AT1G49950 57.8 1.0e-69 261.2
Tan03g1678 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 52.4 2.2e-61 233.4
Tan03g1679 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 52.4 2.2e-61 233.4
Tan03g1678 . 1 247 Single Myb Histone (SMH) Gene Family AT5G67580 52.8 4.3e-65 245.7
Tan03g1679 . 1 247 Single Myb Histone (SMH) Gene Family AT5G67580 52.8 4.3e-65 245.7
Tan03g1678 . 1 247 Single Myb Histone (SMH) Gene Family AT3G49850 50.2 1.6e-56 217.2
Tan03g1679 . 1 247 Single Myb Histone (SMH) Gene Family AT3G49850 50.2 1.6e-56 217.2
Tan04g2776 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 51.4 1.3e-69 260.8
Tan04g2777 . 1 265 Single Myb Histone (SMH) Gene Family AT1G17520 51.4 3.2e-65 246.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013733 1 1 1 0 1 0 2 0 0 0 0 0 1 1 1 2 0 2 1 0 0 0 1 1 1 0 1 4 2 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27343 PF00538 Linker_histone 1.10E-10 CL0123 Tan TF