Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g2778 | ATGGCTGGTTTGGCTCCAGAAGGTTCCCAATTTGATGCACGTCAGTATGACTCTAAAATGAATGAGTTGCTTTCAGCTGATGGACAGGATTTCTTCACCTCTTACGATGAAGTTTATGACAGTTTTGATTCTATGGGCCTGCAAGAAAACCTTCTTAGAGGCATTTATGCTTATGGTTTTGAGAAACCATCTGCAATTCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGGCTTGATGTGATCCAACAGGCGCAGTCTGGAACAGGAAAGACTGCAACTTTCTGCTCTGGTATTTTGCAGCAACTTGATTATGGTCTTGTGCAATGCCAGGCTTTGGTCTTAGCACCCACTAGGGAACTGGCACAACAGATCGAGAAGGTTATGCGAGCCCTTGGTGATTATCTTGGTGTGAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTACGTGAGGACCAACGCATTCTTCAAGCTGGTGTTCATGTGGTTGTTGGTACTCCTGGTCGTGTGTTTGATATGTTGCGTAGACAGTCACTTCGTCCTGATTGCATTCGAATGTTTGTGTTGGATGAGGCTGATGAGATGCTTTCCCGTGGATTCAAGGATCAGATTTATGATATTTTCCAGCTGCTACCATCCAAGATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCTGAAGCTCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTAAGGATTCTTGTAAAGCGTGATGAGCTCACCTTGGAAGGTATCAAGCAGTTCTATGTCAATGTCGACAAGGAAGACTGGAAGCTCGAGACTCTCTGTGATCTTTACGAGACTTTGGCCATCACCCAAAGTGTCATCTTCGTCAATACTCGACGTAAAGTGGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACGGTATCTGCCACCCATGGTGACATGGACCAGAACACCCGAGACATTATCATGCGTGAGTTCCGTTCAGGCTCTTCTAGAGTCCTTATTACCACCGATCTATTGGCCCGTGGTATCGATGTCCAGCAGGTTTCTCTTGTTATTAACTATGATCTGCCGACACAACCGGAGAATTACCTTCATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAAGGTGTTGCCATCAACTTTGTAACGGGCGAGGATGATAGAATGTTATTCGACATTCAGAAGTTTTACAACGTGGAAATTGAAGAGCTGCCAGCTAATGTTGCTGATCTCCTGTGA | 1242 | 45.41 | MAGLAPEGSQFDARQYDSKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTGEDDRMLFDIQKFYNVEIEELPANVADLL | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 87226522 | 87230733 | + | Tan0006129.1 | Tan04g2778 | 751182 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g2778 | 413 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 40 | 68 | IPR014014 | GO:0003724(InterPro) | |
Tan04g2778 | 413 | Pfam | DEAD/DEAH box helicase | 65 | 227 | IPR011545 | GO:0003676(InterPro)|GO:0005524(InterPro) | |
Tan04g2778 | 413 | FunFam | Eukaryotic initiation factor 4A-III | 248 | 413 | - | - | |
Tan04g2778 | 413 | Pfam | Helicase conserved C-terminal domain | 266 | 374 | IPR001650 | - | |
Tan04g2778 | 413 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 37 | 399 | - | GO:0003723(PANTHER)|GO:0003724(PANTHER) | |
Tan04g2778 | 413 | SMART | helicmild6 | 293 | 374 | IPR001650 | - | |
Tan04g2778 | 413 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 187 | 195 | IPR000629 | - | |
Tan04g2778 | 413 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 71 | 241 | IPR014001 | - | |
Tan04g2778 | 413 | SMART | ultradead3 | 59 | 256 | IPR014001 | - | |
Tan04g2778 | 413 | FunFam | Eukaryotic initiation factor 4A-II | 28 | 247 | - | - | |
Tan04g2778 | 413 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 109 | 394 | IPR027417 | - | |
Tan04g2778 | 413 | Gene3D | - | 249 | 413 | IPR027417 | - | |
Tan04g2778 | 413 | CDD | SF2_C_DEAD | 253 | 383 | - | - | |
Tan04g2778 | 413 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 252 | 413 | IPR001650 | - | |
Tan04g2778 | 413 | CDD | DEADc_EIF4A | 45 | 242 | - | - | |
Tan04g2778 | 413 | Gene3D | - | 30 | 248 | IPR027417 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan02g1617 | Tan-Chr2:75260681 | Tan04g2778 | Tan-Chr4:87226522 | 5.00E-229 | dispersed | |
Tan04g2778 | Tan-Chr4:87226522 | Tan10g0256 | Tan-Chr10:2281674 | 2.80E-75 | dispersed | |
Tan04g2778 | Tan-Chr4:87226522 | Tan06g0154 | Tan-Chr6:1445857 | 3.10E-231 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g2778 | K03257 | - | csv:101223055 | 808.905 |