Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2778 ATGGCTGGTTTGGCTCCAGAAGGTTCCCAATTTGATGCACGTCAGTATGACTCTAAAATGAATGAGTTGCTTTCAGCTGATGGACAGGATTTCTTCACCTCTTACGATGAAGTTTATGACAGTTTTGATTCTATGGGCCTGCAAGAAAACCTTCTTAGAGGCATTTATGCTTATGGTTTTGAGAAACCATCTGCAATTCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGGCTTGATGTGATCCAACAGGCGCAGTCTGGAACAGGAAAGACTGCAACTTTCTGCTCTGGTATTTTGCAGCAACTTGATTATGGTCTTGTGCAATGCCAGGCTTTGGTCTTAGCACCCACTAGGGAACTGGCACAACAGATCGAGAAGGTTATGCGAGCCCTTGGTGATTATCTTGGTGTGAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTACGTGAGGACCAACGCATTCTTCAAGCTGGTGTTCATGTGGTTGTTGGTACTCCTGGTCGTGTGTTTGATATGTTGCGTAGACAGTCACTTCGTCCTGATTGCATTCGAATGTTTGTGTTGGATGAGGCTGATGAGATGCTTTCCCGTGGATTCAAGGATCAGATTTATGATATTTTCCAGCTGCTACCATCCAAGATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCTGAAGCTCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTAAGGATTCTTGTAAAGCGTGATGAGCTCACCTTGGAAGGTATCAAGCAGTTCTATGTCAATGTCGACAAGGAAGACTGGAAGCTCGAGACTCTCTGTGATCTTTACGAGACTTTGGCCATCACCCAAAGTGTCATCTTCGTCAATACTCGACGTAAAGTGGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACGGTATCTGCCACCCATGGTGACATGGACCAGAACACCCGAGACATTATCATGCGTGAGTTCCGTTCAGGCTCTTCTAGAGTCCTTATTACCACCGATCTATTGGCCCGTGGTATCGATGTCCAGCAGGTTTCTCTTGTTATTAACTATGATCTGCCGACACAACCGGAGAATTACCTTCATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAAGGTGTTGCCATCAACTTTGTAACGGGCGAGGATGATAGAATGTTATTCGACATTCAGAAGTTTTACAACGTGGAAATTGAAGAGCTGCCAGCTAATGTTGCTGATCTCCTGTGA 1242 45.41 MAGLAPEGSQFDARQYDSKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTGEDDRMLFDIQKFYNVEIEELPANVADLL 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 87226522 87230733 + Tan0006129.1 Tan04g2778 751182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2778 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724(InterPro)
Tan04g2778 413 Pfam DEAD/DEAH box helicase 65 227 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Tan04g2778 413 FunFam Eukaryotic initiation factor 4A-III 248 413 - -
Tan04g2778 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Tan04g2778 413 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 399 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Tan04g2778 413 SMART helicmild6 293 374 IPR001650 -
Tan04g2778 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Tan04g2778 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Tan04g2778 413 SMART ultradead3 59 256 IPR014001 -
Tan04g2778 413 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
Tan04g2778 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Tan04g2778 413 Gene3D - 249 413 IPR027417 -
Tan04g2778 413 CDD SF2_C_DEAD 253 383 - -
Tan04g2778 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Tan04g2778 413 CDD DEADc_EIF4A 45 242 - -
Tan04g2778 413 Gene3D - 30 248 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1617 Tan-Chr2:75260681 Tan04g2778 Tan-Chr4:87226522 5.00E-229 dispersed
Tan04g2778 Tan-Chr4:87226522 Tan10g0256 Tan-Chr10:2281674 2.80E-75 dispersed
Tan04g2778 Tan-Chr4:87226522 Tan06g0154 Tan-Chr6:1445857 3.10E-231 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2778 K03257 - csv:101223055 808.905