Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan04g2797 | ATGAGTAATTGGTTGGGTTTTTCTCTCACTCCCCACCTGAAAATCCATGATGAAACCTCCGCCGCCGCCTCCCCCGGCGAACACCCCATCCCCGGCAGCTTTCCGCCCCTCATGCCGCTCCGCTCCGATGGATCTCTCTGTATCCCCGCCGCCGCTCACGATTGGAGATCATACGAGAATGAAACGGGTGCAACGAATGAAGAGGAAAGTCCAAAACTTGAGGATTTTTTGGGGAATTGTTATTCAAACTCACCGCCAAACGATGAGACCCATAATAACAACAACAATAACTTTATTCAGCCAAATAATAATAATAATAACAACAATGATAATAATGAAGATGATAATTACCATTATCAGGCCGATCATCAATCTTTAATTTCGAATAATGGTAATGCAATTTACAAGTCGTGGTTGGGACCTACGACTTCGAATGGTTCGCAAAACGAGTGTGGGTTTCGATCTCTGTCTCTTGGGATGAGCCCCAACTCCCCAAACGACATCGCTTCATTGTCTTCGTCGCCGCCGCCGCATGGGGTGGCTGATTCCCGGAAACGCCCGATGCCGATGCCGATGCCGGTGCCGATTTCGGTGGGAAAGCCTCTGGTTAAAGAACCTGTTCCTAGAAAGTCCATTGATACCTTTGGACAAAGAACCTCTCAGTTTCGTGGTGTTACAAGGCATAGATGGACAGGAAGATATGAGGCACATTTATGGGACAACAGCTGTAGAAAAGAGGGCCAAACAAGGAAGGGAAGGCAAGGCGGTTATGATAAGGAAGAAAAAGCGGCACGAGCATATGATTTAGCTGCATTAAAATACTGGGGTCCAACGACACATATAAATTTCCCACTGAGTAATTACGAAAATGAGCTTGAAGAAATGAAAAACATGACCAGACAGGAGTTCGTAGCCAACTTGAGAAGGAAAAGCAGTGGATTCTCAAGAGGAGCTTCAATGTACAGAGGAGTAACAAGACATCATCAACATGGAAGGTGGCAAGCTAGAATTGGAAGAGTTGCAGGAAATAAAGATTTGTACCTAGGCACATTTAGCACACAAGAGGAGGCGGCAGAGGCCTACGACATAGCTGCCATCAAGTTTAGGGGGACGAGTGCAGTGACAAATTTCGACATTAGTAGGTACGACGTGAAGAGGATTTGCTCTAGCTCGACTCTGATTGCTGGTGATCTTGCGAAACGTTCACCGTTAAAGGACGGTACTCCCTCGACGACTGAGGACTATACTGCTTGTGCTTCGCCATCGTCCTCGCAACCACTCTTGGCCATCACTGGCGATGGCGGTGCCGAGAGTCACCACGAGTTGGTTGGCATGGTTTGGTGTGACAATGCTGTTGTAGATGACGATAATCAACAACACGAGAATGCTGCAAAAATGAACAATGACTTGTGTGTGATGGGCTCGAGCAATAGGACGGAGCCATCAAAATGTTGTACGATGCAGAACAACGGGGAGTTTGGGATCGGGGTCGGGGTCGGAGGAGGCGAGTATTCACAAGGCTATTACTCAATGCAAGAGGCAAAATATGAAGATGGGAATGATGAGGGGGATCAAAATAGGCAGCTAGGAGATAATGTAACATTGGCTCATCATCATGTTCCAATGTTTGCTTTGTGGAATGAATGA | 1647 | 46.93 | MSNWLGFSLTPHLKIHDETSAAASPGEHPIPGSFPPLMPLRSDGSLCIPAAAHDWRSYENETGATNEEESPKLEDFLGNCYSNSPPNDETHNNNNNNFIQPNNNNNNNNDNNEDDNYHYQADHQSLISNNGNAIYKSWLGPTTSNGSQNECGFRSLSLGMSPNSPNDIASLSSSPPPHGVADSRKRPMPMPMPVPISVGKPLVKEPVPRKSIDTFGQRTSQFRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTHINFPLSNYENELEEMKNMTRQEFVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPLKDGTPSTTEDYTACASPSSSQPLLAITGDGGAESHHELVGMVWCDNAVVDDDNQQHENAAKMNNDLCVMGSSNRTEPSKCCTMQNNGEFGIGVGVGGGEYSQGYYSMQEAKYEDGNDEGDQNRQLGDNVTLAHHHVPMFALWNE | 548 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 87505443 | 87509207 | + | Tan0010950.1 | Tan04g2797 | 751201 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan04g2797 | 548 | ProSiteProfiles | AP2/ERF domain profile. | 320 | 378 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Tan04g2797 | 548 | PRINTS | Ethylene responsive element binding protein signature | 360 | 380 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Tan04g2797 | 548 | PRINTS | Ethylene responsive element binding protein signature | 222 | 233 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Tan04g2797 | 548 | MobiDBLite | consensus disorder prediction | 80 | 114 | - | - | |
| Tan04g2797 | 548 | CDD | AP2 | 319 | 380 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Tan04g2797 | 548 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 112 | 420 | - | - | |
| Tan04g2797 | 548 | SUPERFAMILY | DNA-binding domain | 319 | 380 | IPR016177 | GO:0003677(InterPro) | |
| Tan04g2797 | 548 | MobiDBLite | consensus disorder prediction | 77 | 117 | - | - | |
| Tan04g2797 | 548 | MobiDBLite | consensus disorder prediction | 150 | 177 | - | - | |
| Tan04g2797 | 548 | FunFam | AP2-like ethylene-responsive transcription factor | 319 | 380 | - | - | |
| Tan04g2797 | 548 | Pfam | AP2 domain | 221 | 276 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Tan04g2797 | 548 | Pfam | AP2 domain | 321 | 370 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Tan04g2797 | 548 | Gene3D | AP2/ERF domain | 220 | 286 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Tan04g2797 | 548 | Gene3D | AP2/ERF domain | 320 | 380 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Tan04g2797 | 548 | ProSiteProfiles | AP2/ERF domain profile. | 221 | 284 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Tan04g2797 | 548 | SMART | rav1_2 | 221 | 290 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Tan04g2797 | 548 | SMART | rav1_2 | 320 | 384 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Tan04g2797 | 548 | SUPERFAMILY | DNA-binding domain | 220 | 286 | IPR016177 | GO:0003677(InterPro) | |
| Tan04g2797 | 548 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 220 | 286 | - | - | |
| Tan04g2797 | 548 | CDD | AP2 | 220 | 286 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Tan04g2797 | 548 | MobiDBLite | consensus disorder prediction | 150 | 190 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan03g1701 | Tan-Chr3:72988612 | Tan04g2797 | Tan-Chr4:87505443 | 5.10E-100 | dispersed | |
| Tan03g1702 | Tan-Chr3:72989291 | Tan04g2797 | Tan-Chr4:87505443 | 3.90E-98 | dispersed | |
| Tan04g2797 | Tan-Chr4:87505443 | Tan08g1184 | Tan-Chr8:28966042 | 4.60E-97 | dispersed | |
| Tan04g2797 | Tan-Chr4:87505443 | Tan02g1691 | Tan-Chr2:79514328 | 7.30E-103 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 27347 | PF00847 | AP2 | 2.00E-09 | CL0081 | Tan | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan04g2797 | K09285 | - | csv:101205762 | 762.681 |