Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2799 ATGAATTCAAGTCCAAAGTCCTGCACCTCTCCTTTCACAGCAACTCAATGGCAAGAACTGGAACACCAAGCACTGATCTTCAAATACATGGTTTCAGGAGTACCAATCCCTCCTGATCTAATCTTCTCTGTGAAAAGAAGCTTGGATTCCTCCATTTCTGCAAGACTCTTCCCTCACCAACCCATTGGGTGGGGGTGTTTTGAGATGGGTTTTGGCAGAAAAGCAGACCCTGAGCCAGGAAGGTGCAGGAGAACAGATGGGAAAAAATGGAGATGCTCAAAAGAAGCTTATCCAGACTCCAAATACTGCGAGAGGCACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAATATCTTCAACGCCACCAACTCAAACGCCACCGCCTTTAATCCTCACTTCAAACAGGAGCCTCTCTTCTTCCACTCCAACCTCCTCTACCTATTCTCTCTCTACACTTTCTTCTTCTTCTTCTTCACTGACCTGTGAAACTCAGTCCTATCACCAAGCCCCTGCTGCTGCTGGTGGTTATCATGAATCCTCCATTCATCCATTTCTGTATCCTCAATCTTCCTCCTCCAGACCTCCATGTTCTGATTTCTCTCCAAACAATTCAAACCCTCAACTCTTTTTGTACTCAGGGACTCATTCTCAGGCTGACAAAGAGTACAGGGATATTAATGGTCCAAGAGAAGGTGTGGGCGTGCAGGCGTTCTTCCCCTCAGTTGCAGATTCTGCAAGAAGCATAGGTGAGGTTTATAGTCAGACAATGGGGATGGATTCTTATAAAGGATGCTCCCAATCTGTTTCCCAAAGCCACCAAATTTACAGTTCTAAACAGGCAAGGCAACAACAAGAGCAACACTGCTTTGTTTTGGGCACAGATTTCAATAAATCATCAAGATCAGCTAAAACAGAGGAAGAAGAAGATGATGCAGAAACCCAGAAGCCACTACTCCACTTCTTTGAGGATTGCCCACCAAAAAACTCAGATTCCTGGCTTGATTTAGCCTCAAATTCAAATGGTTAA 1035 45.02 MNSSPKSCTSPFTATQWQELEHQALIFKYMVSGVPIPPDLIFSVKRSLDSSISARLFPHQPIGWGCFEMGFGRKADPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEISSTPPTQTPPPLILTSNRSLSSSTPTSSTYSLSTLSSSSSSLTCETQSYHQAPAAAGGYHESSIHPFLYPQSSSSRPPCSDFSPNNSNPQLFLYSGTHSQADKEYRDINGPREGVGVQAFFPSVADSARSIGEVYSQTMGMDSYKGCSQSVSQSHQIYSSKQARQQQEQHCFVLGTDFNKSSRSAKTEEEEDDAETQKPLLHFFEDCPPKNSDSWLDLASNSNG 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 87531207 87533326 - Tan0011980.1 Tan04g2799 751203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2799 344 MobiDBLite consensus disorder prediction 103 152 - -
Tan04g2799 344 MobiDBLite consensus disorder prediction 132 152 - -
Tan04g2799 344 Pfam QLQ 11 44 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan04g2799 344 Pfam WRC 77 119 IPR014977 -
Tan04g2799 344 SMART QLQ_2 10 46 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan04g2799 344 MobiDBLite consensus disorder prediction 323 344 - -
Tan04g2799 344 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan04g2799 344 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Tan04g2799 344 PANTHER GROWTH-REGULATING FACTOR 5 6 329 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1695 Tan-Chr2:79638106 Tan04g2799 Tan-Chr4:87531207 1.20E-35 dispersed
Tan03g1700 Tan-Chr3:72965015 Tan04g2799 Tan-Chr4:87531207 4.80E-33 dispersed
Tan04g2799 Tan-Chr4:87531207 Tan08g0018 Tan-Chr8:438945 7.60E-66 dispersed
Tan04g2799 Tan-Chr4:87531207 Tan04g2800 Tan-Chr4:87531207 1.60E-193 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27348 PF08879 WRC 1.80E-21 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2799 - - - 0.0