Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2812 ATGCAGCTTGTTTCTCGCCATTTCTTGCTACTGGTATGCTTCTCTTTCCCCATTTATGTCGTTTCTGGTTTAACCTCAGATGGGTTGGCTTTATTGTCTCTTCAAACCCACTGGACTATTCAGACTCCGTTCGACCCTGTTTGGAATGCCTCTGATTCCACTCCCTGTTCTTGGGATGGGATTGAATGTGATCAAAACCTTCGTGTCATCACCTTCAATCTCTCTGGTTATGGGGTTTCTGGTCAGCTTGGACCTCAAATTGCACGTTTGAATCAGTTGCGTACCATTGCTTTGACTACCAACGATTTCTCTGGTGCAATTCCTTATGGGATAGGTAACTGTAGCCATTTAGAGCACTTGGATCTCTCCCTGAACCAATTTGGTGGGGAAATTCCTCAGTCTTTAACTCACCTTAGGAACTTGACGTTTTTGAACTTCCATGCCAATGTTCTAACAGGTGCAATACCCAACTCGTTATTTCAAATTCTGAATTTGCAATATGTGTATCTTAGCAGAAACAATCTCAACGGTTCTATTCCTACAAATGTGGGGAATTTGAGGCAGGTGTTGCATTTGTATTTGTATAGAAATCAGTTGTCTGGAACTATACCTTCTTCCATAGGGAATTGTAGCCAATTGGTGGATCTTTATTTGGATCTGAACCAGTTGGTGGGAGTGTTGCCCAGTAGTCTTAACAATCTTCATAATCTTGTTAAATTGGGTGTCAGCCGCAACAATCTTGATGGTCCAATTCCTTTGGGTTCAGGAAGTTGTCAGAGTTTAGAATATCTAGATTTGTCCTTCAATGGTTATACAGGAGGTATACCTGCTGGGCTGGGCAACTGTAGTGGCCTAAGAACCTTACTCATTGTAAATTCCAGCCTAACAGGTCACATTCCTGCCTCCTTCGGCCGGCTAACTAATCTTACCACTCTTGATCTCTCTAGAAATCAACTGTCTGGGAATATACCACCCGAATTCGGGGATTGCAAATCCTTAAAAGAATTGGATTTGTACGTCAACCAACTTGAGGGACGTATCCCTAGTGAATTGAGTTTGCTAAGTGCATTAGAGACCCTTCAATTGTTTTCGAATCGCTTGACTGGTGAGATTCCAAATAGCATCTGGAAGATTGCAAGTCTCCAGCATATTGTTGTGTACAACAACAACCTTTCTGGGGAACTGCCCTTGATAATAACTGAGCTCAAGCACCTTAAAAACATTTCTGTGTTCAACAACCAGTTTTCTGGAGTCATACCTCAAAGTCTGGGACTCAACAGTAGCTTAGTGCAAGTAGAGTTCACTAATAACCAGTTCTCTGGTCAAATTCCACCCAATCTATGCTTTGGAAAGACATTAAGAGTGGTAAATTTAGGTTTGAATCGATTTGAAGGTAGTGTACCTTCAGATGTTGGAACCTGTTCGACTCTTCAGAGGTTGATTTTGAGAAGGAATAATCTAACAGGGGTTCTGCCAGAATTTATGAGAAATCATGGCCTTCGGTTCGTGGATGCCAGTGAAAACAACCTGAATGGAACGATTCCCTCAAGTTTGGGAAACTGCATCAATCTCACCTCAATTAACTTGTCAAGCAACAAGCTTACGGGTCTTATACCTAAGGAGTTGGGGAATCTTGTGAATCTTCAAAGTTTGAGTTTGTCTCACAATTTCTTGGAAGGACCTTTGCCATCTGCCCTGTCGCATTGTACCAAACTGGATCAGTTTGACGTAGGATTCAATTTATTGAATGGTTCTTTACCTCATAGTTTGGCCAGCTGGAAAGTTATATCCACGTTGATACTAAAAGAGAATCGATTTACTGGAGGCATCCCAAATGTATTATCAGAACTTGAAAGCCTTTCACTGCTAGATCTTGGTGGCAATTTGTTTGGAGGTGAAATCCCTTCATCTGTTGGAGCTTGGAAGAATCTGTTTTATTCTTTGAATCTCAGTAACAATGGGTTAACTGGCCCAATACCTTCTGAGTTAGAGAGTCTGGCAATGCTAGAGAAGTTAGATATATCTCGCAATAACTTGACTGGAAGTTTAAGAGTTCTTGGCGAACTCAGTTCATCGTTAGTTGAGCTTAACATTTCAGATAATTTCTTCACGGGTCCTGTGCCACAAACATTAATGAAATTTCTGAATTCTCGTCCCTCGTCGTTCTTAGGCAACCCTGGGTTGTGCATCAGCTGCGAGGAACTAGATGGCTTAAGTTGCAATAGAAGTAGCAGTGTCAAAGCTTGTGCCATTCATTCAAGCTCTCATGATAGCTCTCGTCTTAGCAACATACAAATTGCAATGATAGCTCTTGGATCTTCACTCTTTATTGTTTTTCTGCTTCTTGGGTTGGTTTATAAGTTTGTTTATAGGAGAAGAAACAAGAAAAAAATTGAGACCTCTGCTCAAGTAGGAACGACTTCCTTGCTCATCGACAGGGTAATAAAGGCTACTGATAATCTAGATGAACGTTTCGTCATTGGGAGAGGAGCACATGGAGTTGTTTATAAGGCTTTCCTTGATTCAAAAAGAACTTTTGCTGTAAAGAAGCTTACATTTGGAGGATGTAAAGGGGGAAGCCAGAGTATGGTTAGAGAAATTCAAACTGTCCGTAACATCAAGCATCGAAACTTGATCACTTTGGAAGATTTTTGGTTGGGAAAAGACCATGGTCTATTACTTTACAGATACCAGCCTAATGGAAGCCTTTATGATGTATTGCATGAGATGAATCCAGCTCCAGCTTTAACATGGGAAGTTCGTATTAATATAGCCATCGGTATCGCACATGGATTAGCATATCTCCATCACGATTGTGATCCTCCTATCATACACCGAGACATCAAACCGCAAAATATACTTCTAGATTCGGAGATGGAACCTCATATCGCCGATTTTGGTCTTGCAAAACTGCTGGATCAGACTTCTGCACCAACAACTTCATCATCTTTTGCGGGTACAATTGGCTACATTGCTCCAGAGAATTCATTCTCAGCAGCAAAGAGCAAAGCTTCAGATGTGTATAGTTATGGGGTGGTTTTACTCGAGCTGATAACGAGAAAGAAGCCATCGGATGTATCATTTACAGAGGTAGGGAGTATCATGGCTTGGGTTCGGTCGGTTTGGAACGAGACACGAGAAATAGATAGTATTGTTGATCCATGGCTTGTGGAAGAACTTATAGATTCTGATTGGAGGGAGAGGATTGAAAAAGTGCTTCTGGTGGCTTTGAGATGCACAGAAAAAGAGCCTAACAAGAGACCTACAATGAGAGATGTTGTCAGCCACTTGATTGATTCAAAGAGGAGTCATTAA 3315 41.36 MQLVSRHFLLLVCFSFPIYVVSGLTSDGLALLSLQTHWTIQTPFDPVWNASDSTPCSWDGIECDQNLRVITFNLSGYGVSGQLGPQIARLNQLRTIALTTNDFSGAIPYGIGNCSHLEHLDLSLNQFGGEIPQSLTHLRNLTFLNFHANVLTGAIPNSLFQILNLQYVYLSRNNLNGSIPTNVGNLRQVLHLYLYRNQLSGTIPSSIGNCSQLVDLYLDLNQLVGVLPSSLNNLHNLVKLGVSRNNLDGPIPLGSGSCQSLEYLDLSFNGYTGGIPAGLGNCSGLRTLLIVNSSLTGHIPASFGRLTNLTTLDLSRNQLSGNIPPEFGDCKSLKELDLYVNQLEGRIPSELSLLSALETLQLFSNRLTGEIPNSIWKIASLQHIVVYNNNLSGELPLIITELKHLKNISVFNNQFSGVIPQSLGLNSSLVQVEFTNNQFSGQIPPNLCFGKTLRVVNLGLNRFEGSVPSDVGTCSTLQRLILRRNNLTGVLPEFMRNHGLRFVDASENNLNGTIPSSLGNCINLTSINLSSNKLTGLIPKELGNLVNLQSLSLSHNFLEGPLPSALSHCTKLDQFDVGFNLLNGSLPHSLASWKVISTLILKENRFTGGIPNVLSELESLSLLDLGGNLFGGEIPSSVGAWKNLFYSLNLSNNGLTGPIPSELESLAMLEKLDISRNNLTGSLRVLGELSSSLVELNISDNFFTGPVPQTLMKFLNSRPSSFLGNPGLCISCEELDGLSCNRSSSVKACAIHSSSHDSSRLSNIQIAMIALGSSLFIVFLLLGLVYKFVYRRRNKKKIETSAQVGTTSLLIDRVIKATDNLDERFVIGRGAHGVVYKAFLDSKRTFAVKKLTFGGCKGGSQSMVREIQTVRNIKHRNLITLEDFWLGKDHGLLLYRYQPNGSLYDVLHEMNPAPALTWEVRINIAIGIAHGLAYLHHDCDPPIIHRDIKPQNILLDSEMEPHIADFGLAKLLDQTSAPTTSSSFAGTIGYIAPENSFSAAKSKASDVYSYGVVLLELITRKKPSDVSFTEVGSIMAWVRSVWNETREIDSIVDPWLVEELIDSDWRERIEKVLLVALRCTEKEPNKRPTMRDVVSHLIDSKRSH 1104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 87648052 87651659 - Tan0009205.1 Tan04g2812 751216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2812 1104 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 410 740 - -
Tan04g2812 1104 SUPERFAMILY RNI-like 408 717 - -
Tan04g2812 1104 Pfam Protein kinase domain 826 1096 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2812 1104 Gene3D Ribonuclease Inhibitor 425 500 IPR032675 -
Tan04g2812 1104 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 785 897 - -
Tan04g2812 1104 Gene3D Ribonuclease Inhibitor 186 424 IPR032675 -
Tan04g2812 1104 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 641 1097 IPR050647 -
Tan04g2812 1104 SMART serkin_6 821 1098 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2812 1104 ProSitePatterns Serine/Threonine protein kinases active-site signature. 943 955 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g2812 1104 Pfam Leucine Rich Repeat 164 186 IPR001611 GO:0005515(InterPro)
Tan04g2812 1104 Pfam Leucine Rich Repeat 357 377 IPR001611 GO:0005515(InterPro)
Tan04g2812 1104 Pfam Leucine Rich Repeat 191 210 IPR001611 GO:0005515(InterPro)
Tan04g2812 1104 Pfam Leucine Rich Repeat 647 666 IPR001611 GO:0005515(InterPro)
Tan04g2812 1104 Pfam Leucine Rich Repeat 116 138 IPR001611 GO:0005515(InterPro)
Tan04g2812 1104 Pfam Leucine Rich Repeat 260 282 IPR001611 GO:0005515(InterPro)
Tan04g2812 1104 Gene3D Ribonuclease Inhibitor 501 747 IPR032675 -
Tan04g2812 1104 Pfam Leucine rich repeat 506 556 IPR001611 GO:0005515(InterPro)
Tan04g2812 1104 Pfam Leucine rich repeat 284 343 IPR001611 GO:0005515(InterPro)
Tan04g2812 1104 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 300 399 - -
Tan04g2812 1104 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Tan04g2812 1104 Gene3D Transferase(Phosphotransferase) domain 1 899 1104 - -
Tan04g2812 1104 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 183 275 - -
Tan04g2812 1104 SUPERFAMILY RNI-like 73 421 - -
Tan04g2812 1104 SUPERFAMILY Protein kinase-like (PK-like) 802 1097 IPR011009 -
Tan04g2812 1104 ProSitePatterns Protein kinases ATP-binding region signature. 827 850 IPR017441 GO:0005524(InterPro)
Tan04g2812 1104 FunFam Leucine-rich repeat family protein 26 182 - -
Tan04g2812 1104 Gene3D Phosphorylase Kinase; domain 1 785 897 - -
Tan04g2812 1104 PRINTS Leucine-rich repeat signature 309 322 - -
Tan04g2812 1104 PRINTS Leucine-rich repeat signature 666 679 - -
Tan04g2812 1104 SMART LRR_typ_2 306 330 IPR003591 -
Tan04g2812 1104 SMART LRR_typ_2 186 210 IPR003591 -
Tan04g2812 1104 SMART LRR_typ_2 545 568 IPR003591 -
Tan04g2812 1104 SMART LRR_typ_2 138 162 IPR003591 -
Tan04g2812 1104 SMART LRR_typ_2 617 641 IPR003591 -
Tan04g2812 1104 SMART LRR_typ_2 666 689 IPR003591 -
Tan04g2812 1104 SMART LRR_typ_2 234 258 IPR003591 -
Tan04g2812 1104 SMART LRR_typ_2 354 378 IPR003591 -
Tan04g2812 1104 FunFam Serine/threonine-protein kinase-like protein CCR4 898 1104 - -
Tan04g2812 1104 ProSiteProfiles Protein kinase domain profile. 821 1104 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2812 1104 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2812 Tan-Chr4:87648052 Tan04g2814 Tan-Chr4:87661531 1.80E-209 dispersed
Tan04g2812 Tan-Chr4:87648052 Tan04g2813 Tan-Chr4:87661531 9.20E-214 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67520 PF00069 Pkinase 9.70E-47 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2812 K28089 - csv:101204802 1729.15