Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2813 ATGCAGCTTGTTTCCCGCCATTTCTTGCTACTGGTATGCTTCTCTTTCCCTATCTATGTCGTTTCTGGTTTAAGTTCAGATGGGTTGGCTTTATTGTCACTCCAAAGCCGCTGGACTAGCGAGACTCCTTTTGTCCCTGTTTGGAATGCCTCTGATTCCACTCCCTGTTCTTGGGCTGGGATTGAATGTGATCAAAACCTTCGTGTCATCACCTTGAATCTCTCTTTCTATGGGGTTTCGGGTCAGCTCGGACCCGAAATTGGGCGTTTGACCCAGTTGCGTACCATTTATTTGTTCACGAACAGTTTTTCGGGTGCAATTCCTGATGGGATTGGTAACTGTAGCCATTTAGAGTTATTGGATCTCTCCTTTAACCAATTTGGTGGAGAAATTCCTCAGTCGTTAAGCAACCTTAGGAACTTGACGTTTTTGAACTTCCATGCCAATGTTTTAACAGGTGCAATACCGGACTCGTTATTTCAAATTCTGAATTTGCAGGATGTGTATCTTAGTGAGAATAATCTCAACGGTTCTATTCCTTCAAATGTAGGGAATTTGAGGCAGCTGTTGCATTTGTATCTTTATGGAAATGAGTTATCTGGTATCATACCTTCTTCTATAGGGAATTGTAGCCAATTGGTGGATCTTTATTTGGATCTGAACCAGTTGGTGGGAGTGTTGCCCAGTAGTCTTAACAATCTTCATAATCTTGTTAATTTGGGTGTCAGCCGCAACAATCTTGAGGGTCCAATTCCTTTGGGTTCGGGAAGTTGTCAGAGTCTAGAATATATAGATTTGTCATTCAATGGTTATACAGGAGGTATACCTGCTGGGCTGGGGAACTGTAGTGGCCTAAGAACTTTACTCATTGTAAATTCCAGCCTAACAGGTCATATTCCTTCCTCCTTTGGCCGGTTAACTAATCTTACGACTCTTGATCTCTCTAGAAATCAACTGTCTGGGAATATACCACCCGAATTCGGGGATTGCAAATCCTTAAAAGAATTGGATTTGTATGTCAACCAACTCGAGGGGCGTATCCCTAGTGAATTGGGTTTGCTACGTAGACTAGAGGTCCTTCAATTGTTTTCGAATAGCTTGACTGGTGAGATTCCAATTAGCATCTGGAAGATTGCAAGTCTCCAGCATATTCTTGTGTACAACAACAATCTGTCTGGGGAACTGCCTTTGATAATAACTGAGCTCAAGCACCTCAAAAACATTTCTGTGTTCAACAACCACTTTTCTGGAGTCATACCTCAAACTCTGGGACTCAACAGTAGCTTAGTGCAAGTGGAGTTCACTAATAACCAGTTCTCTGGTCAAATTCCACCTAATCTATGCTCTGGAAAGACATTAAGGGTGTTAAATTTAGGTTTGAATCAATTTCAAGGTAGCTTACCTTCAGATATTGGAACCTGTGGGACTCTTCAGAGGTTGATTTTGAGCAAGAATAATCTAACAGGGGTTCTGCCAGAATTTATGAGAAATCATGGCCTTCGGTTCATGGATGCCAGTGAAAACCACCTGAATGGAACAATTCCCTCAAGTTTGGGAAACTGCATCAATCTCACCTCAATTAATTTGTCAAGCAACAAGCTTACAGGTCATATTCCTGATGAGTTGGGAAATCTTGTGAACCTTCAAAGTTTGAGCTTGTCTCACAACTTCTTGGAAGGTCGTTTGCCATCTTCCCTGTCAAATTGTACCAAACTGGATAAGTTTGACGTAGGATTCAATTTATTGAATGGTTCTGTACCTCATAGTTTGTCCAGCTGGAAAGTTATATCAACATTGATATTAAAAGAGAATCGATTTACTGGAGGCATCCCGAATGTATTATCGGAACTTGATAGCCTTTCACTGCTAGACCTTGGTGGCAATTTGTTTGGAGGTGAAATCCCTTCATCTATTGGAGCTTTGAAGAATCTGTTTTATTCCTTGAATATCAGTAACAATGGGTTAATTGGCGAACTACCTTCTGAGCTGGCAAGTTTGGTCAAGTTAGGGGAATTAGATATATCTCACAATAATTTGACTGGAAGTTTAAGTGTTCTTGGCGAACTTTCATCATTACTTGAGCTTAACATTTCTGACAATTTATTCACGGGTCCTGTGCCACAGACATTAATGAAGTTACTGAATTCTGATCCCTCATTGTTCTCCGGTAACCCCAGGCTGTGCATCAGCTGCGATGAACTAGATGGCTTAAGTTGCAACGGAAATGGCAGTATCAAACCTTGTGCTAGTCATTCAAGCTCACATTCAGGCTCTCGTCTTAGCAATATTCAAATTGTAATGATAGCTCTCGGAACTTCACTCTTTATTATTCTTTTACTTCTTGGATTGGTTTATAAGTTTGTTTATAGAAGGAGAAACAAACAAAACATTGAGACCTCTGCTCAAGTGGGAACAACTTCCTTGCTTGACAAGGTAATGGAGGCCACTGATAACCTAGATGAGCGATTCATCATCGGGAGAGGAGCACATGGAATCGTTTATAAGGCATCCCTAGATTCAAATAGAACTTTTGCAGTAAAGAAGCTTACATTTATAGGATGTAAAGGGGGAAGCCAGAATATGGTTAAAGAAATTCGAACTGTCGGCAACATTAGGCACCGGAACTTGATCACTTTGGAAGACTTCTGGTTGGGAAAAGACCATGGTCTATTGCTTTACAGATACCAGCCGAATGGGAGCCTTTATGATGTGTTGCATGAGATGAATCCATCTCCAGCTCTTACTTGGAAAGTCCGCTATAATATAGCCACTGGTATTGCTCATGGATTGGTGTATCTCCATTACGATTGTGATCCTCCTATAATACACCGAGACATCAAACCGCAGAATATACTTCTAGATTCAGAGATGGAACCTCGTATTGGCGATTTTGGTCTTGCGAAGCTGTTGGATCAGACCTCTGTATCAACGACTTCATCTTCTTTTGCGGGTACAATTGGCTACATTGCACCAGAGAATGCATTTTCAGCCGCAGGGAGCAAAGCTTCAGATGTGTACAGTTATGGGGTGGTTTTACTTGAGCTAATAACAGGAAAGAAGCCATCAGATCCATCATTTGTGGAGGTTGGGAATATCATGGCTTGGGTTCGGTCGATTTGGAATGGGACAGAAGAAATAGATAGAATTGTTGACCCAAGTCTTGTGGAAGAACTTGTAAATTCTGATCAGAAGGAGCAGATTAAGCAGGTGCTTCTGGTGGCTTTGAGATGCACAGAAAAGGAGCCTAACAAGAGACCTACAATGAGAGATGTTGTAAATCACTTGATTGATTCAAAGACGAGTCATTTCAGCAAATATGGCTAA 3324 41.28 MQLVSRHFLLLVCFSFPIYVVSGLSSDGLALLSLQSRWTSETPFVPVWNASDSTPCSWAGIECDQNLRVITLNLSFYGVSGQLGPEIGRLTQLRTIYLFTNSFSGAIPDGIGNCSHLELLDLSFNQFGGEIPQSLSNLRNLTFLNFHANVLTGAIPDSLFQILNLQDVYLSENNLNGSIPSNVGNLRQLLHLYLYGNELSGIIPSSIGNCSQLVDLYLDLNQLVGVLPSSLNNLHNLVNLGVSRNNLEGPIPLGSGSCQSLEYIDLSFNGYTGGIPAGLGNCSGLRTLLIVNSSLTGHIPSSFGRLTNLTTLDLSRNQLSGNIPPEFGDCKSLKELDLYVNQLEGRIPSELGLLRRLEVLQLFSNSLTGEIPISIWKIASLQHILVYNNNLSGELPLIITELKHLKNISVFNNHFSGVIPQTLGLNSSLVQVEFTNNQFSGQIPPNLCSGKTLRVLNLGLNQFQGSLPSDIGTCGTLQRLILSKNNLTGVLPEFMRNHGLRFMDASENHLNGTIPSSLGNCINLTSINLSSNKLTGHIPDELGNLVNLQSLSLSHNFLEGRLPSSLSNCTKLDKFDVGFNLLNGSVPHSLSSWKVISTLILKENRFTGGIPNVLSELDSLSLLDLGGNLFGGEIPSSIGALKNLFYSLNISNNGLIGELPSELASLVKLGELDISHNNLTGSLSVLGELSSLLELNISDNLFTGPVPQTLMKLLNSDPSLFSGNPRLCISCDELDGLSCNGNGSIKPCASHSSSHSGSRLSNIQIVMIALGTSLFIILLLLGLVYKFVYRRRNKQNIETSAQVGTTSLLDKVMEATDNLDERFIIGRGAHGIVYKASLDSNRTFAVKKLTFIGCKGGSQNMVKEIRTVGNIRHRNLITLEDFWLGKDHGLLLYRYQPNGSLYDVLHEMNPSPALTWKVRYNIATGIAHGLVYLHYDCDPPIIHRDIKPQNILLDSEMEPRIGDFGLAKLLDQTSVSTTSSSFAGTIGYIAPENAFSAAGSKASDVYSYGVVLLELITGKKPSDPSFVEVGNIMAWVRSIWNGTEEIDRIVDPSLVEELVNSDQKEQIKQVLLVALRCTEKEPNKRPTMRDVVNHLIDSKTSHFSKYG 1107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 87661531 87665315 - Tan0010461.1 Tan04g2813 751217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2813 1107 SUPERFAMILY RNI-like 347 699 - -
Tan04g2813 1107 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 785 895 - -
Tan04g2813 1107 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 181 275 - -
Tan04g2813 1107 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Tan04g2813 1107 SMART LRR_sd22_2 306 338 - -
Tan04g2813 1107 SMART LRR_sd22_2 666 691 - -
Tan04g2813 1107 SMART LRR_sd22_2 234 266 - -
Tan04g2813 1107 SMART LRR_sd22_2 545 571 - -
Tan04g2813 1107 SMART LRR_sd22_2 114 140 - -
Tan04g2813 1107 Gene3D Transferase(Phosphotransferase) domain 1 897 1105 - -
Tan04g2813 1107 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Tan04g2813 1107 FunFam Serine/threonine-protein kinase-like protein CCR4 896 1106 - -
Tan04g2813 1107 Gene3D Phosphorylase Kinase; domain 1 784 895 - -
Tan04g2813 1107 ProSitePatterns Protein kinases ATP-binding region signature. 825 848 IPR017441 GO:0005524(InterPro)
Tan04g2813 1107 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 23 180 - -
Tan04g2813 1107 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 451 736 - -
Tan04g2813 1107 ProSiteProfiles Protein kinase domain profile. 819 1097 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2813 1107 ProSitePatterns Serine/Threonine protein kinases active-site signature. 941 953 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g2813 1107 CDD STKc_IRAK 825 1095 - -
Tan04g2813 1107 ProSiteProfiles Leucine-rich repeat profile. 668 690 IPR001611 GO:0005515(InterPro)
Tan04g2813 1107 SUPERFAMILY RNI-like 72 422 - -
Tan04g2813 1107 Pfam Protein kinase domain 824 1094 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2813 1107 Gene3D Ribonuclease Inhibitor 187 352 IPR032675 -
Tan04g2813 1107 Gene3D Ribonuclease Inhibitor 353 735 IPR032675 -
Tan04g2813 1107 Pfam Leucine rich repeat 284 343 IPR001611 GO:0005515(InterPro)
Tan04g2813 1107 Pfam Leucine Rich Repeat 164 186 IPR001611 GO:0005515(InterPro)
Tan04g2813 1107 Pfam Leucine Rich Repeat 260 282 IPR001611 GO:0005515(InterPro)
Tan04g2813 1107 Pfam Leucine Rich Repeat 523 545 IPR001611 GO:0005515(InterPro)
Tan04g2813 1107 Pfam Leucine Rich Repeat 116 138 IPR001611 GO:0005515(InterPro)
Tan04g2813 1107 Pfam Leucine Rich Repeat 189 210 IPR001611 GO:0005515(InterPro)
Tan04g2813 1107 Pfam Leucine Rich Repeat 647 666 IPR001611 GO:0005515(InterPro)
Tan04g2813 1107 Pfam Leucine Rich Repeat 477 497 IPR001611 GO:0005515(InterPro)
Tan04g2813 1107 Pfam Leucine Rich Repeat 619 641 IPR001611 GO:0005515(InterPro)
Tan04g2813 1107 Pfam Leucine Rich Repeat 547 569 IPR001611 GO:0005515(InterPro)
Tan04g2813 1107 Pfam Leucine Rich Repeat 500 521 IPR001611 GO:0005515(InterPro)
Tan04g2813 1107 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 300 398 - -
Tan04g2813 1107 SMART LRR_typ_2 234 258 IPR003591 -
Tan04g2813 1107 SMART LRR_typ_2 306 330 IPR003591 -
Tan04g2813 1107 SMART LRR_typ_2 90 114 IPR003591 -
Tan04g2813 1107 SMART LRR_typ_2 186 209 IPR003591 -
Tan04g2813 1107 SMART LRR_typ_2 545 569 IPR003591 -
Tan04g2813 1107 SMART LRR_typ_2 138 162 IPR003591 -
Tan04g2813 1107 SMART LRR_typ_2 617 641 IPR003591 -
Tan04g2813 1107 SMART LRR_typ_2 666 689 IPR003591 -
Tan04g2813 1107 SMART serkin_6 819 1096 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2813 1107 SUPERFAMILY Protein kinase-like (PK-like) 800 1095 IPR011009 -
Tan04g2813 1107 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 599 1092 IPR052592 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2813 Tan-Chr4:87661531 Tan04g2815 Tan-Chr4:87669848 7.50E-38 dispersed
Tan04g2812 Tan-Chr4:87648052 Tan04g2813 Tan-Chr4:87661531 9.20E-214 tandem
Tan04g2813 Tan-Chr4:87661531 Tan04g2814 Tan-Chr4:87661531 2.60E-285 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67521 PF00069 Pkinase 4.60E-45 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2813 K28089 - csv:101204561 1728.76