Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2819 ATGCAGCTTGTTTTCCGCCATTTCTTGCTACTGGTAAGCTTCTCATTCCTTTTTGAGGTCGTTTCTGGTTTAAGTTCAGATGGGTTGGCTTTATTGTCACTTCTAAGCCGCTGGACTACCAAGACTCCCTTTGTCCCTGTTTGGAATGCCTCTGCTTCCACTCCCTGTTCTTGGGATGGGATTGAATGTGATCAAAACCTTCGTGTCATCACCTTGGATCTCTCTAACCATGGGGTTTCGGGTCAGCTCGGACCCGAAATTGCACGTTTGAACCAGTTGCGTACCATTGATTTGATCAACAACAATTTCTCTGGTGCAATTCCTTATGGGATAGGTAACTGTAGCCATTTAGAGTTCTTGGATATCTCCCTTAACCAATTTAGTGGAGAAATTCCTCAGTCGTTAACAAACCTTAGGAACTTGACGTTTTTGAACTTCCATGCCAATGTTCTAACTGGTGCAATACCCAACTCGTTATTTCAAAATCTGAATTTGGAGAGTGTGCATCTTAGCGAAAACAACCTCAATGGCTCTATTCCTACGAATGTGGGGAATTTGAGGCAGGTACTGCAGTTGGATCTGTATGGAAATGAGCTGTCTGGTACCATACCTTCTTCCATAGGGAATTGTAGCCAATTGGTGGATCTTTATTTGAATCAGAACCGATTAGTGGGAATATTGCCCAATAGTCTTAACAATCTTGATAATCTTGTTAATCTGGGTGTAAGCCAGAACAATCTTGAGGGTCCAATTCCTTTGGGTTCAGGGGGTTGCCAGAGTTTAAAATATATAGATTTGTCATTCAATGGTTATAGAGGAGGTATACCTGCCGGGCTGGCCAACTGCAGTCGCCTAACAACCTTACTCATTATAAATTCCAATCTAACAGGTCATATTCCTTCCTCCTTTGGCCGGCTAAATAAGCTTTCGCTTCTTGATCTATCTATAAATCAACTGTCTGGGAATATACCCCGCGAACTCGGGGCGTGCAAATCCTTGAAAGAAGTGAATTTGTACGTCAACCAACTAGAGGGACATATTCCTAGTGAATTGGGTTTGCTTAGTGGATTAGAAACCCTTCAATTGTTTTCAAACCGCTTGACTGGTGAGATTCCAATTAGCATCTGGAAGATTGCAAGTCTCCAGCATATTCTTGTGTACAATAACAACCTTTCTGGAGAACTTCCCTTGATAATAACTGAGCTCAAGCACCTCAAAAACATTTCTGTGTTCAGCAACCATTTTTCTGGAGTCATACCTCAAAGTTTGGGACTCAACAGTAGCTTAGAGCAAGTGGAGTTCACTGATAACCAGTTCACTGGTCAAATTCCACCCAATCTATGCTCTGGAAAGACATTAAGGGTGTTAAATTTAGGTTCGAATCAATTTCAAGGTAGCATACCTTCAGATATAGGAACCTGTTTGACTCTTTACAGGTTGCGTTTGGGAAGGAATAACCTCACAGGGGTTCTGCCAGAATTTATGAGAAATCACAGCCTTTTGTACATGGATGCCAGTGAAAATAACCTGAATGGAACAATTCCCTCAAGTTTGGGAAACTGCACCAATCTCACCTCAATTAATTTGTCAAATAACAAGCTTACTGGTCTTATACCTAATGAGTTGGGAAATCTTGTGAATCTTCAAGGTTTGAGCTTGTCTCACAACTTCTTGGAAGGACCTTTACCATCTTCCCTGTCAAATTGTAACAAATTGGATGAGTTTGATGTAGGATTCAATTTATTGAATGGTTCTATACCTCATAGTTTGGCGAGCTGGAAGGTTATATCCACGTTGATATTAAAAGAGAATCGATTTACTGGAGGAATCCCGAATGTATTATCAGAACTTGGCAGCCTTTCATTGCTAGATCTTGGTGGCAATTTGTTTGGAGGTGAAATCCCTTTATCTGTTGGAGCTTTGAAGAATCTGTTTTATTCCTTGAATCTCAGTAACAATGAGCTAACTGGCCAACTACCATCTGAGCTAGTGAGTTTGGTCAAGCTAGAGGAGTTAGATATATCTCACAATAATTTGACTGGAAGTTTACGTGTTCTTGGCAAACTAAGTTCATCGTTAGTTGAGCTTAACATTTCTGATAATTTATTCACGGGCCCTGTGCCACAGACATTAATGAGGTTACTGAATTCTCATCCCTCATCGTTCTTTGGTAACCCTGGGCTGTGCATCAGCTGTGATGAACTAGATGGCTTAAGCTGCGATAGAAATAGTAGTATCAAACCTTGTGCTACTCATTTAAGCTCTCATGGTAGCTCTTATCTTAGCAATGTACAGATTGCAATGATTGCTCTCGGATCTTCACTTTTTATTATTCTTTTGCTTATTGTATTGATTCATAAGTTTGTTTATAGTAGAAGAAACAAGCAAAACATTGAGACCTATGCTCAAGTAGGAACAACATCCTTGCTCGACAAGGTAATGGAGTCCACCGATAATCTAGATGAGCGGTTCATCATTGGGAGAGGAGCACATGGAGTTGTCTATAAAGCTTCCCTGGATTCAAATACAACTTTTGCAGTAAAGAAGCTTACATTTATAGGGTGTAAAGGGGGAAACCAGAGTATGGTTAGAGAAATTCGAACTCTCGAGAGCATCAGGCACCGAAACTTGATCACTTTAGAAGACTTCTGGTTCGGAAAAGATCATGGTCTATTGCTTTACAAATACCAGCCGAATGGCAGCCTTTATGATGTGTTGCATGAGGTGAATCTAGCTCCAGCTCTTACATGGAATGTCCGCCATAATATAGCCACCGGTATTGCACATGGATTGGCATATCTCCATTTTGATTGTGATCCTCCTATAATACACCGAGACATCAAACCGCAGAATATACTTCTAGATTCGGAGATGGAACCTCATATTGCCGATTTTGGTCTTGCAAAGCTGCTGGATCAGACTTCTGCACCAACGGCTTCATCTTCTTTCGCAGGTACAATTGGCTACATTGCTCCAGAGAATGCATTTTCAGCAGCAATGAACAAATCTTCAGATGTGTATAGTTATGGGGTGGTTTTACTCGAGCTTATAACGAGAAAGAAACCTTCGGATATATCATTTGTGGAGGTAGGGGGTATAATGACTTGGGTTCGGTCGGTTTGGAATGAGACAGGAGAAATAGATAGTATTGTTGATCCAAGACTTATGGAAGAACTTGTAGATTCTGATGTGAGGGAGGAGATTAAGAAGGTGGTTCTGGTGGCTTTGAGATGCACAGAAAAGGAGCCTAACAAGAGACCTACAATGCGAGATGTTGTCAACCACTTGATTGATTCAAAGCGTAAGAGAAACATTTTTCTCACTGTGGGAGAACCTTCCATCTGA 3345 41.05 MQLVFRHFLLLVSFSFLFEVVSGLSSDGLALLSLLSRWTTKTPFVPVWNASASTPCSWDGIECDQNLRVITLDLSNHGVSGQLGPEIARLNQLRTIDLINNNFSGAIPYGIGNCSHLEFLDISLNQFSGEIPQSLTNLRNLTFLNFHANVLTGAIPNSLFQNLNLESVHLSENNLNGSIPTNVGNLRQVLQLDLYGNELSGTIPSSIGNCSQLVDLYLNQNRLVGILPNSLNNLDNLVNLGVSQNNLEGPIPLGSGGCQSLKYIDLSFNGYRGGIPAGLANCSRLTTLLIINSNLTGHIPSSFGRLNKLSLLDLSINQLSGNIPRELGACKSLKEVNLYVNQLEGHIPSELGLLSGLETLQLFSNRLTGEIPISIWKIASLQHILVYNNNLSGELPLIITELKHLKNISVFSNHFSGVIPQSLGLNSSLEQVEFTDNQFTGQIPPNLCSGKTLRVLNLGSNQFQGSIPSDIGTCLTLYRLRLGRNNLTGVLPEFMRNHSLLYMDASENNLNGTIPSSLGNCTNLTSINLSNNKLTGLIPNELGNLVNLQGLSLSHNFLEGPLPSSLSNCNKLDEFDVGFNLLNGSIPHSLASWKVISTLILKENRFTGGIPNVLSELGSLSLLDLGGNLFGGEIPLSVGALKNLFYSLNLSNNELTGQLPSELVSLVKLEELDISHNNLTGSLRVLGKLSSSLVELNISDNLFTGPVPQTLMRLLNSHPSSFFGNPGLCISCDELDGLSCDRNSSIKPCATHLSSHGSSYLSNVQIAMIALGSSLFIILLLIVLIHKFVYSRRNKQNIETYAQVGTTSLLDKVMESTDNLDERFIIGRGAHGVVYKASLDSNTTFAVKKLTFIGCKGGNQSMVREIRTLESIRHRNLITLEDFWFGKDHGLLLYKYQPNGSLYDVLHEVNLAPALTWNVRHNIATGIAHGLAYLHFDCDPPIIHRDIKPQNILLDSEMEPHIADFGLAKLLDQTSAPTASSSFAGTIGYIAPENAFSAAMNKSSDVYSYGVVLLELITRKKPSDISFVEVGGIMTWVRSVWNETGEIDSIVDPRLMEELVDSDVREEIKKVVLVALRCTEKEPNKRPTMRDVVNHLIDSKRKRNIFLTVGEPSI 1114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 87671298 87675564 - Tan0015958.5 Tan04g2819 751223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2819 1114 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Tan04g2819 1114 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 181 275 - -
Tan04g2819 1114 FunFam Leucine-rich repeat receptor-like protein kinase 24 180 - -
Tan04g2819 1114 ProSitePatterns Protein kinases ATP-binding region signature. 826 849 IPR017441 GO:0005524(InterPro)
Tan04g2819 1114 Gene3D Transferase(Phosphotransferase) domain 1 898 1108 - -
Tan04g2819 1114 SMART LRR_typ_2 545 569 IPR003591 -
Tan04g2819 1114 SMART LRR_typ_2 90 114 IPR003591 -
Tan04g2819 1114 SMART LRR_typ_2 354 378 IPR003591 -
Tan04g2819 1114 SMART LRR_typ_2 138 162 IPR003591 -
Tan04g2819 1114 SMART LRR_typ_2 186 210 IPR003591 -
Tan04g2819 1114 SMART LRR_typ_2 666 689 IPR003591 -
Tan04g2819 1114 SMART LRR_typ_2 211 233 IPR003591 -
Tan04g2819 1114 SMART LRR_typ_2 521 544 IPR003591 -
Tan04g2819 1114 SMART LRR_typ_2 306 330 IPR003591 -
Tan04g2819 1114 SMART LRR_typ_2 617 641 IPR003591 -
Tan04g2819 1114 SUPERFAMILY RNI-like 341 700 - -
Tan04g2819 1114 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 341 1096 - -
Tan04g2819 1114 Gene3D Ribonuclease Inhibitor 25 186 IPR032675 -
Tan04g2819 1114 ProSiteProfiles Protein kinase domain profile. 820 1107 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2819 1114 PRINTS Leucine-rich repeat signature 524 537 - -
Tan04g2819 1114 PRINTS Leucine-rich repeat signature 666 679 - -
Tan04g2819 1114 FunFam Serine/threonine-protein kinase-like protein CCR4 897 1108 - -
Tan04g2819 1114 Gene3D Phosphorylase Kinase; domain 1 785 896 - -
Tan04g2819 1114 FunFam Predicted protein 298 397 - -
Tan04g2819 1114 SUPERFAMILY RNI-like 72 423 - -
Tan04g2819 1114 ProSitePatterns Serine/Threonine protein kinases active-site signature. 942 954 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g2819 1114 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 785 896 - -
Tan04g2819 1114 Gene3D Ribonuclease Inhibitor 353 735 IPR032675 -
Tan04g2819 1114 Gene3D Ribonuclease Inhibitor 187 352 IPR032675 -
Tan04g2819 1114 ProSiteProfiles Leucine-rich repeat profile. 668 690 IPR001611 GO:0005515(InterPro)
Tan04g2819 1114 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 451 737 - -
Tan04g2819 1114 Pfam Protein kinase domain 825 1095 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2819 1114 Pfam Leucine Rich Repeat 453 474 IPR001611 GO:0005515(InterPro)
Tan04g2819 1114 Pfam Leucine Rich Repeat 92 114 IPR001611 GO:0005515(InterPro)
Tan04g2819 1114 Pfam Leucine Rich Repeat 523 545 IPR001611 GO:0005515(InterPro)
Tan04g2819 1114 Pfam Leucine Rich Repeat 668 683 IPR001611 GO:0005515(InterPro)
Tan04g2819 1114 Pfam Leucine Rich Repeat 191 210 IPR001611 GO:0005515(InterPro)
Tan04g2819 1114 Pfam Leucine Rich Repeat 116 138 IPR001611 GO:0005515(InterPro)
Tan04g2819 1114 Pfam Leucine Rich Repeat 547 569 IPR001611 GO:0005515(InterPro)
Tan04g2819 1114 Pfam Leucine Rich Repeat 499 521 IPR001611 GO:0005515(InterPro)
Tan04g2819 1114 Pfam Leucine Rich Repeat 647 666 IPR001611 GO:0005515(InterPro)
Tan04g2819 1114 Pfam Leucine Rich Repeat 164 186 IPR001611 GO:0005515(InterPro)
Tan04g2819 1114 SUPERFAMILY Protein kinase-like (PK-like) 799 1096 IPR011009 -
Tan04g2819 1114 SMART serkin_6 820 1097 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2814 Tan-Chr4:87661531 Tan04g2819 Tan-Chr4:87671298 7.40E-38 dispersed
Tan04g2815 Tan-Chr4:87669848 Tan04g2819 Tan-Chr4:87671298 5.70E-280 dispersed
Tan04g2819 Tan-Chr4:87671298 Tan05g3018 Tan-Chr5:82068742 1.30E-58 dispersed
Tan04g2819 Tan-Chr4:87671298 Tan04g2825 Tan-Chr4:87704411 1.10E-17 proximal
Tan04g2818 Tan-Chr4:87671298 Tan04g2819 Tan-Chr4:87671298 5.70E-272 tandem
Tan04g2819 Tan-Chr4:87671298 Tan04g2820 Tan-Chr4:87671298 9.00E-209 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67527 PF00069 Pkinase 2.60E-45 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2819 K28089 - csv:101204561 1650.57