Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2820 ATGCAGCTTGTTTTCCGCCATTTCTTGCTACTGGTAAGCTTCTCATTCCTTTTTGAGGTCGTTTCTGGTTTAAGTTCAGATGGGTTGGCTTTATTGTCACTTCTAAGCCGCTGGACTACCAAGACTCCCTTTGTCCCTGTTTGGAATGCCTCTGCTTCCACTCCCTGTTCTTGGGATGGGATTGAATGTGATCAAAACCTTCGTGTCATCACCTTGGATCTCTCTAACCATGGGGTTTCGGGTCAGCTCGGACCCGAAATTGCACGTTTGAACCAGTTGCGTACCATTGATTTGATCAACAACAATTTCTCTGGTGCAATTCCTTATGGGATAGGTAACTGTAGCCATTTAGAGTTCTTGGATATCTCCCTTAACCAATTTAGTGGAGAAATTCCTCAGTCGTTAACAAACCTTAGGAACTTGACGTTTTTGAACTTCCATGCCAATGTTCTAACTGGTGCAATACCCAACTCGTTATTTCAAAATCTGAATTTGGAGAGTGTGCATCTTAGCGAAAACAACCTCAATGGCTCTATTCCTACGAATGTGGGGAATTTGAGGCAGGTACTGCAGTTGGATCTGTATGGAAATGAGCTGTCTGGTACCATACCTTCTTCCATAGGGAATTGTAGCCAATTGGTGGATCTTTATTTGAATCAGAACCGATTAGTGGGAATATTGCCCAATAGTCTTAACAATCTTGATAATCTTGTTAATCTGGGTGTAAGCCAGAACAATCTTGAGGGTCCAATTCCTTTGGGTTCAGGGGGTTGCCAGAGTTTAAAATATATAGATTTGTCATTCAATGGTTATAGAGGAGGTATACCTGCCGGGCTGGCCAACTGCAGTCGCCTAACAACCTTACTCATTATAAATTCCAATCTAACAGGTCATATTCCTTCCTCCTTTGGCCGGCTAAATAAGCTTTCGCTTCTTGATCTATCTATAAATCAACTGTCTGGGAATATACCCCGCGAACTCGGGGCGTGCAAATCCTTGAAAGAAGTGAATTTGTACGTCAACCAACTAGAGGGACATATTCCTAGTGAATTGGGTTTGCTTAGTGGATTAGAAACCCTTCAATTGTTTTCAAACCGCTTGACTGGTGAGATTCCAATTAGCATCTGGAAGATTGCAAGTCTCCAGCATATTCTTGTGTACAATAACAACCTTTCTGGAGAACTTCCCTTGATAATAACTGAGCTCAAGCACCTCAAAAACATTTCTGTGTTCAGCAACCATTTTTCTGGAGTCATACCTCAAAGTTTGGGACTCAACAGTAGCTTAGAGCAAGTGGAGTTCACTGATAACCAGTTCACTGGTCAAATTCCACCCAATCTATGCTCTGGAAAGACATTAAGGGTGTTAAATTTAGGTTCGAATCAATTTCAAGGTAGCATACCTTCAGATATAGGAACCTGTTTGACTCTTTACAGGTTGCGTTTGGGAAGGAATAACCTCACAGGGGTTCTGCCAGAATTTATGAGAAATCACAGCCTTTTGTACATGGATGCCAGTGAAAATAACCTGAATGGAACAATTCCCTCAAGTTTGGGAAACTGCACCAATCTCACCTCAATTAATTTGTCAAATAACAAGCTTACTGGTCTTATACCTAATGAGTTGGGAAATCTTGTGAATCTTCAAGGTTTGAGCTTGTCTCACAACTTCTTGGAAGGACCTTTACCATCTTCCCTGTCAAATTGTAACAAATTGGATGAGTTTGATGTAGGATTCAATTTATTGAATGGTTCTATACCTCATAGTTTGGCGAGCTGGAAGGTTATATCCACGTTGATATTAAAAGAGAATCGATTTACTGGAGGAATCCCGAATGTATTATCAGAACTTGGCAGCCTTTCATTGCTAGATCTTGGTGGCAATTTGTTTGGAGGTGAAATCCCTTTATCTGTTGGAGCTTTGAAGAATCTGTTTTATTCCTTGAATCTCAGTAACAATGAGCTAACTGGCCAACTACCATCTGAGCTAGTGAGTTTGGTCAAGCTAGAGGAGTTAGATATATCTCACAATAATTTGACTGGAAGTTTACGTGTTCTTGGCAAACTAAGTTCATCGTTAGTTGAGCTTAACATTTCTGATAATTTATTCACGGGCCCTGTGCCACAGACATTAATGAGGTTACTGAATTCTCATCCCTCATCGTTCTTTGGTAACCCTGGGCTGTGCATCAGCTGTGATGAACTAGATGGCTTAAGCTGCGATAGAAATAGTAGTATCAAACCTTGTGCTACTCATTTAAGCTCTCATGGTAGCTCTTATCTTAGCAATGTACAGATTGCAATGATTGCTCTCGGATCTTCACTTTTTATTATTCTTTTGCTTATTGTATTGATTCATAAGTTTGTTTATAGTAGAAGAAACAAGCAAAACATTGAGACCTATGCTCAAGTAGGAACAACATCCTTGCTCGACAAGGTAATGGAGTCCACCGATAATCTAGATGAGCGGTTCATCATTGGGAGAGGAGCACATGGAGTTGTCTATAAAGCTTCCCTGGATTCAAATACAACTTTTGCAGTAAAGAAGCTTACATTTATAGGGTGTAAAGGGGGAAACCAGAGTATGGTTAGAGAAATTCGAACTCTCGAGAGCATCAGGCACCGAAACTTGATCACTTTAGAAGACTTCTGGTTCGGAAAAGATCATGGTCTATTGCTTTACAAATACCAGCCGAATGGCAGCCTTTATGATGTGTTGCATGAGGTGAATCTAGCTCCAGCTCTTACATGGAATGTCCGCCATAATATAGCCACCGGTATTGCACATGGATTGGCATATCTCCATTTTGATTGTGATCCTCCTATAATACACCGAGACATCAAACCGCAGAATATACTTCTAGATTCGGAGATGGAACCTCATATTGCCGATTTTGGTCTTGCAAAGCTGCTGGATCAGACTTCTGCACCAACGGCTTCATCTTCTTTCGCAGGTACAATTGGCTACATTGCTCCAGGTATCATTCTACACATACATTATGAATTAGCTCTTCATTCTCATTTTTCTTTTTTGAAGTATTGA 3042 40.73 MQLVFRHFLLLVSFSFLFEVVSGLSSDGLALLSLLSRWTTKTPFVPVWNASASTPCSWDGIECDQNLRVITLDLSNHGVSGQLGPEIARLNQLRTIDLINNNFSGAIPYGIGNCSHLEFLDISLNQFSGEIPQSLTNLRNLTFLNFHANVLTGAIPNSLFQNLNLESVHLSENNLNGSIPTNVGNLRQVLQLDLYGNELSGTIPSSIGNCSQLVDLYLNQNRLVGILPNSLNNLDNLVNLGVSQNNLEGPIPLGSGGCQSLKYIDLSFNGYRGGIPAGLANCSRLTTLLIINSNLTGHIPSSFGRLNKLSLLDLSINQLSGNIPRELGACKSLKEVNLYVNQLEGHIPSELGLLSGLETLQLFSNRLTGEIPISIWKIASLQHILVYNNNLSGELPLIITELKHLKNISVFSNHFSGVIPQSLGLNSSLEQVEFTDNQFTGQIPPNLCSGKTLRVLNLGSNQFQGSIPSDIGTCLTLYRLRLGRNNLTGVLPEFMRNHSLLYMDASENNLNGTIPSSLGNCTNLTSINLSNNKLTGLIPNELGNLVNLQGLSLSHNFLEGPLPSSLSNCNKLDEFDVGFNLLNGSIPHSLASWKVISTLILKENRFTGGIPNVLSELGSLSLLDLGGNLFGGEIPLSVGALKNLFYSLNLSNNELTGQLPSELVSLVKLEELDISHNNLTGSLRVLGKLSSSLVELNISDNLFTGPVPQTLMRLLNSHPSSFFGNPGLCISCDELDGLSCDRNSSIKPCATHLSSHGSSYLSNVQIAMIALGSSLFIILLLIVLIHKFVYSRRNKQNIETYAQVGTTSLLDKVMESTDNLDERFIIGRGAHGVVYKASLDSNTTFAVKKLTFIGCKGGNQSMVREIRTLESIRHRNLITLEDFWFGKDHGLLLYKYQPNGSLYDVLHEVNLAPALTWNVRHNIATGIAHGLAYLHFDCDPPIIHRDIKPQNILLDSEMEPHIADFGLAKLLDQTSAPTASSSFAGTIGYIAPGIILHIHYELALHSHFSFLKY 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 87671298 87675564 - Tan0015958.6 Tan04g2820 751224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2820 1013 FunFam Predicted protein 298 397 - -
Tan04g2820 1013 SUPERFAMILY RNI-like 346 700 - -
Tan04g2820 1013 ProSitePatterns Protein kinases ATP-binding region signature. 826 849 IPR017441 GO:0005524(InterPro)
Tan04g2820 1013 SMART serkin_6 820 1010 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2820 1013 ProSiteProfiles Protein kinase domain profile. 820 1013 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2820 1013 SMART LRR_typ_2 90 114 IPR003591 -
Tan04g2820 1013 SMART LRR_typ_2 545 569 IPR003591 -
Tan04g2820 1013 SMART LRR_typ_2 354 378 IPR003591 -
Tan04g2820 1013 SMART LRR_typ_2 186 210 IPR003591 -
Tan04g2820 1013 SMART LRR_typ_2 138 162 IPR003591 -
Tan04g2820 1013 SMART LRR_typ_2 666 689 IPR003591 -
Tan04g2820 1013 SMART LRR_typ_2 211 233 IPR003591 -
Tan04g2820 1013 SMART LRR_typ_2 521 544 IPR003591 -
Tan04g2820 1013 SMART LRR_typ_2 306 330 IPR003591 -
Tan04g2820 1013 SMART LRR_typ_2 617 641 IPR003591 -
Tan04g2820 1013 Gene3D Phosphorylase Kinase; domain 1 785 896 - -
Tan04g2820 1013 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 785 896 - -
Tan04g2820 1013 Gene3D Transferase(Phosphotransferase) domain 1 898 1006 - -
Tan04g2820 1013 FunFam Os07g0541700 protein 897 986 - -
Tan04g2820 1013 Gene3D Ribonuclease Inhibitor 188 352 IPR032675 -
Tan04g2820 1013 Gene3D Ribonuclease Inhibitor 353 735 IPR032675 -
Tan04g2820 1013 Pfam Leucine Rich Repeat 453 474 IPR001611 GO:0005515(InterPro)
Tan04g2820 1013 Pfam Leucine Rich Repeat 191 210 IPR001611 GO:0005515(InterPro)
Tan04g2820 1013 Pfam Leucine Rich Repeat 499 521 IPR001611 GO:0005515(InterPro)
Tan04g2820 1013 Pfam Leucine Rich Repeat 116 138 IPR001611 GO:0005515(InterPro)
Tan04g2820 1013 Pfam Leucine Rich Repeat 523 545 IPR001611 GO:0005515(InterPro)
Tan04g2820 1013 Pfam Leucine Rich Repeat 547 569 IPR001611 GO:0005515(InterPro)
Tan04g2820 1013 Pfam Leucine Rich Repeat 647 666 IPR001611 GO:0005515(InterPro)
Tan04g2820 1013 Pfam Leucine Rich Repeat 164 186 IPR001611 GO:0005515(InterPro)
Tan04g2820 1013 Pfam Leucine Rich Repeat 92 114 IPR001611 GO:0005515(InterPro)
Tan04g2820 1013 Pfam Leucine Rich Repeat 668 683 IPR001611 GO:0005515(InterPro)
Tan04g2820 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 942 954 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g2820 1013 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Tan04g2820 1013 SUPERFAMILY RNI-like 72 421 - -
Tan04g2820 1013 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 181 275 - -
Tan04g2820 1013 FunFam Leucine-rich repeat receptor-like protein kinase 24 180 - -
Tan04g2820 1013 SUPERFAMILY Protein kinase-like (PK-like) 799 1000 IPR011009 -
Tan04g2820 1013 PANTHER OS04G0122200 PROTEIN 43 135 IPR051809 -
Tan04g2820 1013 Gene3D Ribonuclease Inhibitor 25 185 IPR032675 -
Tan04g2820 1013 ProSiteProfiles Leucine-rich repeat profile. 668 690 IPR001611 GO:0005515(InterPro)
Tan04g2820 1013 Pfam Protein kinase domain 825 1000 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2820 1013 PRINTS Leucine-rich repeat signature 524 537 - -
Tan04g2820 1013 PRINTS Leucine-rich repeat signature 666 679 - -
Tan04g2820 1013 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 451 737 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2817 Tan-Chr4:87669848 Tan04g2820 Tan-Chr4:87671298 5.00E-222 dispersed
Tan04g2818 Tan-Chr4:87671298 Tan04g2820 Tan-Chr4:87671298 2.50E-203 dispersed
Tan04g2820 Tan-Chr4:87671298 Tan05g3018 Tan-Chr5:82068742 5.10E-41 dispersed
Tan04g2819 Tan-Chr4:87671298 Tan04g2820 Tan-Chr4:87671298 9.00E-209 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67528 PF00069 Pkinase 2.50E-34 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2820 K28089 - csv:101204561 1498.8