Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2825 ATGAGACCGCTTCAGCCGCCGCAGGGTGTGAATCCGGCCACCGATCGTCCTCGTCGTCGCCCGAATCTAACCCTTCCTCTTCCGCAGCGGGACAATACATCTTTGGCTGTTCCTCTCCCTTTGCCTCCGACGTCTTCCAACTCGGCTCCTCCTCCTTCCACCAGTCAACTCCACAACGGCAACCGTCCACCGGAGTCTCATCCTCTGACGCAGACGCAGCCGCAGCCGCAGAAGCATCAGGTTTTCAGCCTCTCCGACTTTGAGCGAGTCAGTCGAATCGGAAGTGGATGCGGAGGAACTGTGTATAAAGTGATTCACCGTCCCACCGGCCGCGTCTATGCTCTGAAGGTCATTTATGGCAACCACGAGGACGCGGTTCGGCTTCAGATGTGCCGTGAGGTCGAGATCCTTCGCGACGTTGACAATCCCTATGTGGTCAAGTGCCACGATATGTTCGATCACAACGGCGAAATCCAGGTTCTTCTTGAATACATGGATCGAGGCTCTCTGGAAGGAACGCATATCCCTCACGAACATCATCTCTCCGATTTGGCTCGCCAGATTCTCAGCGGACTCGCTTATCTCCATAGCCGCCGAATCGTCCATCGCGACATCAAACCCTCGAATCTCCTAATTAATTCACGGAGGCAGGTTAAGATCGCGGATTTTGGCGTCGGTCGAATCTTGGAACAGACGATGGATCCTTGCAATTCCTCCGTTGGAACGATTGCGTACATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGCCAGTACAATGGCTACGCAGGGGATATTTGGAGCTTTGGCGTTAGCATATTGGAATTCTATCTCGGACGGTTTCCTCTCGCTGTGGAGAGGCCTGGGGATTGGGCGAGCTTGATGTGTGCTATTTGTATGGCTCAGCCACCGGAGGCGCCGCCCACGGCGTCGCCGGAGTTTCGCCATTTTATTGCCTGTTGTTTGCAGAGAGAAGCTCGGAAGAGATGGACTGCAGCTGCATTACTGGAACATGCGTTCATAACGAGGAAAAATGGAGCGGCGAGTCAGTACCAGAATCAGCAGACTCATCATCAGAATCTTCGTCAGCTATTACCTCCGCCGCCCCTTCATCCTTCCAGCCTTTCCTGA 1134 53.97 MRPLQPPQGVNPATDRPRRRPNLTLPLPQRDNTSLAVPLPLPPTSSNSAPPPSTSQLHNGNRPPESHPLTQTQPQPQKHQVFSLSDFERVSRIGSGCGGTVYKVIHRPTGRVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPHEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASPEFRHFIACCLQREARKRWTAAALLEHAFITRKNGAASQYQNQQTHHQNLRQLLPPPPLHPSSLS 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 87704411 87706367 + Tan0009681.1 Tan04g2825 751229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2825 377 FunFam Dual specificity mitogen-activated protein kinase kinase 70 165 - -
Tan04g2825 377 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 71 349 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Tan04g2825 377 SMART serkin_6 87 342 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2825 377 FunFam Mitogen-activated protein kinase 2 167 354 - -
Tan04g2825 377 Gene3D Transferase(Phosphotransferase) domain 1 169 366 - -
Tan04g2825 377 MobiDBLite consensus disorder prediction 348 363 - -
Tan04g2825 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g2825 377 CDD PKc_MAPKK_plant_like 85 343 - -
Tan04g2825 377 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524(InterPro)
Tan04g2825 377 MobiDBLite consensus disorder prediction 348 377 - -
Tan04g2825 377 Gene3D Phosphorylase Kinase; domain 1 59 166 - -
Tan04g2825 377 Pfam Protein kinase domain 87 342 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2825 377 MobiDBLite consensus disorder prediction 1 80 - -
Tan04g2825 377 SUPERFAMILY Protein kinase-like (PK-like) 62 353 IPR011009 -
Tan04g2825 377 MobiDBLite consensus disorder prediction 50 80 - -
Tan04g2825 377 ProSiteProfiles Protein kinase domain profile. 87 342 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2825 Tan-Chr4:87704411 Tan05g2167 Tan-Chr5:72452973 1.70E-82 dispersed
Tan04g2819 Tan-Chr4:87671298 Tan04g2825 Tan-Chr4:87704411 1.10E-17 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67529 PF00069 Pkinase 4.20E-60 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2825 K13413 - csv:101219669 644.039