Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2825 ATGAGACCGCTTCAGCCGCCGCAGGGTGTGAATCCGGCCACCGATCGTCCTCGTCGTCGCCCGAATCTAACCCTTCCTCTTCCGCAGCGGGACAATACATCTTTGGCTGTTCCTCTCCCTTTGCCTCCGACGTCTTCCAACTCGGCTCCTCCTCCTTCCACCAGTCAACTCCACAACGGCAACCGTCCACCGGAGTCTCATCCTCTGACGCAGACGCAGCCGCAGCCGCAGAAGCATCAGGTTTTCAGCCTCTCCGACTTTGAGCGAGTCAGTCGAATCGGAAGTGGATGCGGAGGAACTGTGTATAAAGTGATTCACCGTCCCACCGGCCGCGTCTATGCTCTGAAGGTCATTTATGGCAACCACGAGGACGCGGTTCGGCTTCAGATGTGCCGTGAGGTCGAGATCCTTCGCGACGTTGACAATCCCTATGTGGTCAAGTGCCACGATATGTTCGATCACAACGGCGAAATCCAGGTTCTTCTTGAATACATGGATCGAGGCTCTCTGGAAGGAACGCATATCCCTCACGAACATCATCTCTCCGATTTGGCTCGCCAGATTCTCAGCGGACTCGCTTATCTCCATAGCCGCCGAATCGTCCATCGCGACATCAAACCCTCGAATCTCCTAATTAATTCACGGAGGCAGGTTAAGATCGCGGATTTTGGCGTCGGTCGAATCTTGGAACAGACGATGGATCCTTGCAATTCCTCCGTTGGAACGATTGCGTACATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGCCAGTACAATGGCTACGCAGGGGATATTTGGAGCTTTGGCGTTAGCATATTGGAATTCTATCTCGGACGGTTTCCTCTCGCTGTGGAGAGGCCTGGGGATTGGGCGAGCTTGATGTGTGCTATTTGTATGGCTCAGCCACCGGAGGCGCCGCCCACGGCGTCGCCGGAGTTTCGCCATTTTATTGCCTGTTGTTTGCAGAGAGAAGCTCGGAAGAGATGGACTGCAGCTGCATTACTGGAACATGCGTTCATAACGAGGAAAAATGGAGCGGCGAGTCAGTACCAGAATCAGCAGACTCATCATCAGAATCTTCGTCAGCTATTACCTCCGCCGCCCCTTCATCCTTCCAGCCTTTCCTGA 1134 53.97 MRPLQPPQGVNPATDRPRRRPNLTLPLPQRDNTSLAVPLPLPPTSSNSAPPPSTSQLHNGNRPPESHPLTQTQPQPQKHQVFSLSDFERVSRIGSGCGGTVYKVIHRPTGRVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPHEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASPEFRHFIACCLQREARKRWTAAALLEHAFITRKNGAASQYQNQQTHHQNLRQLLPPPPLHPSSLS 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 87704411 87706367 + Tan0009681.1 Tan04g2825 751229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2825 377 FunFam Dual specificity mitogen-activated protein kinase kinase 70 165 - -
Tan04g2825 377 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 71 349 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Tan04g2825 377 SMART serkin_6 87 342 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2825 377 FunFam Mitogen-activated protein kinase 2 167 354 - -
Tan04g2825 377 Gene3D Transferase(Phosphotransferase) domain 1 169 366 - -
Tan04g2825 377 MobiDBLite consensus disorder prediction 348 363 - -
Tan04g2825 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g2825 377 CDD PKc_MAPKK_plant_like 85 343 - -
Tan04g2825 377 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524(InterPro)
Tan04g2825 377 MobiDBLite consensus disorder prediction 348 377 - -
Tan04g2825 377 Gene3D Phosphorylase Kinase; domain 1 59 166 - -
Tan04g2825 377 Pfam Protein kinase domain 87 342 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2825 377 MobiDBLite consensus disorder prediction 1 80 - -
Tan04g2825 377 SUPERFAMILY Protein kinase-like (PK-like) 62 353 IPR011009 -
Tan04g2825 377 MobiDBLite consensus disorder prediction 50 80 - -
Tan04g2825 377 ProSiteProfiles Protein kinase domain profile. 87 342 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2825 K13413 - - csv:101219669 644.039
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2825 Tan-Chr4:87704411 Tan05g2167 Tan-Chr5:72452973 1.70E-82 dispersed
Tan04g2819 Tan-Chr4:87671298 Tan04g2825 Tan-Chr4:87704411 1.10E-17 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g1114 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 69.9 1.6e-135 479.9
Tan08g0048 . 27 351 MAP Kinase Kinase Gene Family AT4G26070 66.9 5.0e-126 448.4
Tan08g0109 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.6 3.6e-108 389.0
Tan09g1114 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.9 7.6e-135 477.6
Tan08g0048 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 64.3 1.7e-118 423.3
Tan08g0109 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.7 2.2e-110 396.4
Tan07g1394 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.7 3.5e-229 791.6
Tan04g2825 . 1 375 MAP Kinase Kinase Gene Family AT1G51660 70.0 3.0e-129 459.1
Tan05g2167 . 47 310 MAP Kinase Kinase Gene Family AT1G51660 55.7 9.6e-83 304.7
Tan04g2825 . 1 375 MAP Kinase Kinase Gene Family AT3G21220 67.8 4.9e-129 458.4
Tan05g2167 . 41 312 MAP Kinase Kinase Gene Family AT3G21220 54.8 9.7e-85 311.2
Tan08g0109 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 84.2 1.1e-171 600.1
Tan09g1114 . 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.9 1.2e-119 427.2
Tan08g0048 . 1 340 MAP Kinase Kinase Gene Family AT5G56580 56.1 1.9e-107 386.7
Tan05g2167 . 1 310 MAP Kinase Kinase Gene Family AT1G18350 63.0 1.9e-108 389.8
Tan04g2825 . 83 342 MAP Kinase Kinase Gene Family AT1G18350 53.2 1.9e-76 283.5
Tan05g2167 . 1 298 MAP Kinase Kinase Gene Family AT3G06230 52.3 1.1e-81 300.8
Tan05g2167 . 1 310 MAP Kinase Kinase Gene Family AT1G73500 65.5 1.8e-114 409.8
Tan04g2825 . 83 342 MAP Kinase Kinase Gene Family AT1G73500 52.8 3.0e-77 286.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009405 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67529 PF00069 Pkinase 4.20E-60 CL0016 Tan PK