Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2826 ATGATGGGATCAGTAGAGGAGAAAACAAATTACCTATCAGACGAAGATATTCCATTGAAGGGAACGCCAGTAGCGAAAAACGCATTGCATACCTTTGATTGTGAGACGGCTCATGTGCGTTCTTCCCCAGATGATAAAAGATGGTGGAAGATTAACAACATTCGTATTAGACCTCTTGAAAGTGCTAAAATAGTGTTGCTTAAAGCAAAGATCAACGTGTTACTACCTTTTGGTCCTCTGGCAATACTGCTGCATTATACAACCGGAAAGCATGGATGGGTCTTCTTTTTCACTTTGCTTGGAATTACACCTTTGGCAGAACGTCTTGGTTATGCGACTGAGCAGCTTGCTTCCTATACTGGACCAACAGTTGGTGGTCTTTTGAATGCAACGTTTGGAAATGCAACCGAAATGATTATATCAATTTATGCATTAAAGAGTGGGATGATTAGGGTTGTTCAACAGTCGTTACTCGGGTCAATCTTGTCAAATATGCTCCTAGTGCTTGGTTGTGCTTTCTTCACCGGTGGGCTTGTTCATCATAAGAAGGTGCAGACTTTCAATAAGGGTGCTGCTGTGGTGAATTCAGGATTGTTGTTGATGGCTGTTATGGGAACAACTTTTCCAGCTGTGCTTCATTTCACCCACACAGAACTTCATTCTGGAGAGTCAGCATTGTCCCTTTCAAGATTTAGCAGTTGTATAATGTTAGTTGCATATGCAAGCTACCTTTTCTTTCAACTAAAAAGTCAGCATAATCTCTATGGTCCTCTTGATGAGGAAGGCGATGATGAAGTTGAGGAGGATTCTGAGATTTATGCTTGGGAAGCAATTGGATGGCTTGCTATCTTGACTGTATGGGTATCGATTTTATCTGGATACCTCGTCGATGCTATCGAGGGAGCATCTGAATCATTACATTTGCCAGTTGCTTTTATCAGTGTAATTTTGTTGCCAATTGTTGGAAATGCTGCCGAACATGCAAGTGCAATCATGTTTGCCATGAAGGATAAGCTTGACATCACCCTTGGAGTTGCTATTGGATCATCTACACAAATATCCATGTTTGTGATCCCGTTTTGTGTCGTCGTTGGATGGTGTATGGGAAGGCCAATGGACTTGAACTTTAAACTCTTTGAGACTGCAACTCTGTTTATCACTGTGCTAGTGGTGGCCTTTATGTTGCAGGTGCATTATCTTCTATCCATCCTCCTGTATATACTCTGCATTATGGGACTATTACTTTGA 1248 41.51 MMGSVEEKTNYLSDEDIPLKGTPVAKNALHTFDCETAHVRSSPDDKRWWKINNIRIRPLESAKIVLLKAKINVLLPFGPLAILLHYTTGKHGWVFFFTLLGITPLAERLGYATEQLASYTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGLVHHKKVQTFNKGAAVVNSGLLLMAVMGTTFPAVLHFTHTELHSGESALSLSRFSSCIMLVAYASYLFFQLKSQHNLYGPLDEEGDDEVEEDSEIYAWEAIGWLAILTVWVSILSGYLVDAIEGASESLHLPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVVGWCMGRPMDLNFKLFETATLFITVLVVAFMLQVHYLLSILLYILCIMGLLL 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 87707625 87712215 + Tan0018633.1 Tan04g2826 751230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2826 415 FunFam Vacuolar cation/proton exchanger 122 261 - -
Tan04g2826 415 NCBIfam calcium/proton exchanger 74 394 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Tan04g2826 415 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 35 401 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Tan04g2826 415 FunFam Vacuolar cation/proton exchanger 265 414 - -
Tan04g2826 415 Gene3D - 122 261 IPR044880 -
Tan04g2826 415 Gene3D - 263 414 IPR044880 -
Tan04g2826 415 Pfam Sodium/calcium exchanger protein 93 248 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan04g2826 415 Pfam Sodium/calcium exchanger protein 277 409 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2826 Tan-Chr4:87707625 Tan05g1008 Tan-Chr5:8413889 3.90E-141 dispersed
Tan04g2826 Tan-Chr4:87707625 Tan03g0788 Tan-Chr3:64009293 1.20E-81 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2826 K07300 - csv:101219432 717.613