Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan04g2826 | ATGATGGGATCAGTAGAGGAGAAAACAAATTACCTATCAGACGAAGATATTCCATTGAAGGGAACGCCAGTAGCGAAAAACGCATTGCATACCTTTGATTGTGAGACGGCTCATGTGCGTTCTTCCCCAGATGATAAAAGATGGTGGAAGATTAACAACATTCGTATTAGACCTCTTGAAAGTGCTAAAATAGTGTTGCTTAAAGCAAAGATCAACGTGTTACTACCTTTTGGTCCTCTGGCAATACTGCTGCATTATACAACCGGAAAGCATGGATGGGTCTTCTTTTTCACTTTGCTTGGAATTACACCTTTGGCAGAACGTCTTGGTTATGCGACTGAGCAGCTTGCTTCCTATACTGGACCAACAGTTGGTGGTCTTTTGAATGCAACGTTTGGAAATGCAACCGAAATGATTATATCAATTTATGCATTAAAGAGTGGGATGATTAGGGTTGTTCAACAGTCGTTACTCGGGTCAATCTTGTCAAATATGCTCCTAGTGCTTGGTTGTGCTTTCTTCACCGGTGGGCTTGTTCATCATAAGAAGGTGCAGACTTTCAATAAGGGTGCTGCTGTGGTGAATTCAGGATTGTTGTTGATGGCTGTTATGGGAACAACTTTTCCAGCTGTGCTTCATTTCACCCACACAGAACTTCATTCTGGAGAGTCAGCATTGTCCCTTTCAAGATTTAGCAGTTGTATAATGTTAGTTGCATATGCAAGCTACCTTTTCTTTCAACTAAAAAGTCAGCATAATCTCTATGGTCCTCTTGATGAGGAAGGCGATGATGAAGTTGAGGAGGATTCTGAGATTTATGCTTGGGAAGCAATTGGATGGCTTGCTATCTTGACTGTATGGGTATCGATTTTATCTGGATACCTCGTCGATGCTATCGAGGGAGCATCTGAATCATTACATTTGCCAGTTGCTTTTATCAGTGTAATTTTGTTGCCAATTGTTGGAAATGCTGCCGAACATGCAAGTGCAATCATGTTTGCCATGAAGGATAAGCTTGACATCACCCTTGGAGTTGCTATTGGATCATCTACACAAATATCCATGTTTGTGATCCCGTTTTGTGTCGTCGTTGGATGGTGTATGGGAAGGCCAATGGACTTGAACTTTAAACTCTTTGAGACTGCAACTCTGTTTATCACTGTGCTAGTGGTGGCCTTTATGTTGCAGGTGCATTATCTTCTATCCATCCTCCTGTATATACTCTGCATTATGGGACTATTACTTTGA | 1248 | 41.51 | MMGSVEEKTNYLSDEDIPLKGTPVAKNALHTFDCETAHVRSSPDDKRWWKINNIRIRPLESAKIVLLKAKINVLLPFGPLAILLHYTTGKHGWVFFFTLLGITPLAERLGYATEQLASYTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGLVHHKKVQTFNKGAAVVNSGLLLMAVMGTTFPAVLHFTHTELHSGESALSLSRFSSCIMLVAYASYLFFQLKSQHNLYGPLDEEGDDEVEEDSEIYAWEAIGWLAILTVWVSILSGYLVDAIEGASESLHLPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVVGWCMGRPMDLNFKLFETATLFITVLVVAFMLQVHYLLSILLYILCIMGLLL | 415 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 87707625 | 87712215 | + | Tan0018633.1 | Tan04g2826 | 751230 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan04g2826 | 415 | FunFam | Vacuolar cation/proton exchanger | 122 | 261 | - | - | |
Tan04g2826 | 415 | NCBIfam | calcium/proton exchanger | 74 | 394 | IPR004798 | GO:0006816(InterPro)|GO:0015369(InterPro) | |
Tan04g2826 | 415 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 35 | 401 | IPR004713 | GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER) | |
Tan04g2826 | 415 | FunFam | Vacuolar cation/proton exchanger | 265 | 414 | - | - | |
Tan04g2826 | 415 | Gene3D | - | 122 | 261 | IPR044880 | - | |
Tan04g2826 | 415 | Gene3D | - | 263 | 414 | IPR044880 | - | |
Tan04g2826 | 415 | Pfam | Sodium/calcium exchanger protein | 93 | 248 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Tan04g2826 | 415 | Pfam | Sodium/calcium exchanger protein | 277 | 409 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g2826 | Tan-Chr4:87707625 | Tan05g1008 | Tan-Chr5:8413889 | 3.90E-141 | dispersed | |
Tan04g2826 | Tan-Chr4:87707625 | Tan03g0788 | Tan-Chr3:64009293 | 1.20E-81 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan04g2826 | K07300 | - | csv:101219432 | 717.613 |