Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2828 ATGGTGAAGAAATGGAATTGGGGAGAGCCGTTGCTGCTAATCAATATCTGCATTTTGGGATGGAGGGCCAGTTTTATCAATGGAGCTACGGATCCAGGAGATGTGTCTGCTCTGAATGCCATGTATACTAGTTTAAACTCGCCTCCAATTCTAACACTATGGACTGCAACTGGTGGAGATCCATGTGGGCAACTTTGGAAAGGCATTACTTGCTCAGGCTCACGGGTCACAGAAATTTCGTTGTCTGGTTTAGGACTTTCTGGATCACTGGGATACCAGCTCTCAAGTTTAACATCACTAATTAATCTAGACGTGAGTATCAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAGCTAAACCTTGGATGTAATAACTACAGTGGAAGCCTCCCCTATTCTATTTCTCAAATGAGTTTGCTTATTTTCTTGAACATCAGCCACAATCAGCTTCGGAATCAAGTGAACGATATGTTCTGGAAGCTTTCTTCCCTGTCCATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTACCCTCCCCCAGAGTTTTAGCAACCTTACCAGTATGAACTCAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATCGATGTTCTTGCATTTCTTCCTCTACAAAACTTGAATGTCGAGAACAACAATTTTACTGGTTGGGTTCCTGAACGATTGAAGAACATAAATATTCAGGATGGTGGCAATTCTTGGAGCTTTGGACTTGCACCCCCACCTCCGCCTGGTACACCTCCAGCCAACCAAAATTACAGATATCACAAGCCTGGGAACAATTACAGCCCACTGAATAGTGGTGCTGCTGGTGGAGATAGCAGTAGATCAGGAATCAGTGGTGGCGCCATTGCTGGAATTCTTATATCTGTGCTTGTGGTGGGAGCACTACTAGCATATCTCCTTGTAAAGAGAAGATCCAAGAAGTCATCTGCAGACATAGAAAAGCAAAAGCTTGGGGACCAGCCTAGCATATCTCTTGCTTCAAATGCAATGCAAGATTCATTGGCAGAGATGAAGCTTATTCATACTTCATCCTCATTTGATGCAAAAGCATTGGATTCTCCTGCTTCAATCAATCTAAAACCCCCACCTATCGATCGTCATAAATCATTTGATGACAATGATACATCGACAATACCTATTGTGAAGAAGACCAATGTCTCTCCTGAGATAAGTGTGAAGTCATATTCAATCGCAGATCTGCAAATGGCTACGGGCAGTTTCAATGTAGAAAACCTTCTTGGTGAGGGATCATTTGGACGCGTTTATCGGGCTCAGTTCGGCGATGGGAAGGTTCTTGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCTAGAGAATTGTTGGAAGATTTCACAGAGATCGTTGCAAATGTATCTCAGTTGCATCATCCTAATGTAACCGAGCTAATGGGTTATTGCTCAGAGCATGGTCTGCATTTGCTACTATATGAGTTCCATAAGAATGGATCACTACATGATTTCTTGCATATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGTGTCAAGATTGCTTTGGGAACGGCCCGAGCATTAGAGTACCTACATGAAGTTTGTGCACCAACAGTTGTTCACAGAAATATAAAGTCAGCCAATATCTTACTGGATGCTGAACTCAATCCTCATCTCTCCGATTGTGGCTTGGCTAGCTTTATAACAAATCTAGATCAGGCATTAGATCAGCAGGCAGGATCTGGATACAGTGCCCCTGAGGTTACTATGTCTGGTCAATATACATTAAAAAGTGATGTATACAGCTTTGGAGTGGTGATGTTAGAACTTCTATGTGGACGTAAGCCATTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTAGTTCGATGGGCTACGCCTCAGCTCCATGACATCGATGCCTTGACGAAAATGGTCGATCCTGCACTTAAAGGGCTGTACCCTGTCAAGTCTCTCTCAAGATTTGCAGACGTTGTGGCTCTCTGCGTCCAGCCTGAGCCTGAATTCAGACCTCCCATGTCTGAGGTGGTGGAAGCATTGGTTCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGTGATCACGGATCATCTTTTAGAACTGATGAACCTGAGGCACACGAGACATCTTAA 2181 43.51 MVKKWNWGEPLLLINICILGWRASFINGATDPGDVSALNAMYTSLNSPPILTLWTATGGDPCGQLWKGITCSGSRVTEISLSGLGLSGSLGYQLSSLTSLINLDVSINNLGPDIPYQLPQNLQKLNLGCNNYSGSLPYSISQMSLLIFLNISHNQLRNQVNDMFWKLSSLSMLDVSFNFLSGTLPQSFSNLTSMNSMFLQNNQFSGTIDVLAFLPLQNLNVENNNFTGWVPERLKNINIQDGGNSWSFGLAPPPPPGTPPANQNYRYHKPGNNYSPLNSGAAGGDSSRSGISGGAIAGILISVLVVGALLAYLLVKRRSKKSSADIEKQKLGDQPSISLASNAMQDSLAEMKLIHTSSSFDAKALDSPASINLKPPPIDRHKSFDDNDTSTIPIVKKTNVSPEISVKSYSIADLQMATGSFNVENLLGEGSFGRVYRAQFGDGKVLAVKKIDSAAFPRELLEDFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPTVVHRNIKSANILLDAELNPHLSDCGLASFITNLDQALDQQAGSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLCGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDEPEAHETS 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 87719541 87727327 + Tan0012011.1 Tan04g2828 751232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2828 726 MobiDBLite consensus disorder prediction 704 726 - -
Tan04g2828 726 Gene3D Ribonuclease Inhibitor 185 247 IPR032675 -
Tan04g2828 726 Gene3D Phosphorylase Kinase; domain 1 385 498 - -
Tan04g2828 726 Gene3D Transferase(Phosphotransferase) domain 1 500 716 - -
Tan04g2828 726 MobiDBLite consensus disorder prediction 245 286 - -
Tan04g2828 726 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 385 498 - -
Tan04g2828 726 PANTHER LEUCINE RICH REPEAT KINASE 2 298 695 IPR051420 -
Tan04g2828 726 Gene3D Ribonuclease Inhibitor 33 184 IPR032675 -
Tan04g2828 726 ProSiteProfiles Protein kinase domain profile. 421 696 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2828 726 MobiDBLite consensus disorder prediction 265 286 - -
Tan04g2828 726 Pfam Leucine rich repeat 121 178 IPR001611 GO:0005515(InterPro)
Tan04g2828 726 Pfam Protein tyrosine and serine/threonine kinase 423 693 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g2828 726 SUPERFAMILY L domain-like 30 236 - -
Tan04g2828 726 ProSitePatterns Protein kinases ATP-binding region signature. 427 450 IPR017441 GO:0005524(InterPro)
Tan04g2828 726 MobiDBLite consensus disorder prediction 711 726 - -
Tan04g2828 726 SUPERFAMILY Protein kinase-like (PK-like) 402 693 IPR011009 -
Tan04g2828 726 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 499 707 - -
Tan04g2828 726 CDD STKc_IRAK 427 696 - -
Tan04g2828 726 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
Tan04g2828 726 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 31 257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2828 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2440 Tan-Chr3:77945359 Tan04g2828 Tan-Chr4:87719541 1.50E-114 dispersed
Tan03g2441 Tan-Chr3:77945359 Tan04g2828 Tan-Chr4:87719541 1.50E-114 dispersed
Tan04g2828 Tan-Chr4:87719541 Tan11g2046 Tan-Chr11:43040410 6.60E-168 dispersed
Tan05g2855 Tan-Chr5:80911037 Tan04g2828 Tan-Chr4:87719541 4.10E-146 transposed
Tan04g2828 Tan-Chr4:87719541 Tan06g0048 Tan-Chr6:704598 2.20E-224 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g0246 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0247 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0248 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0249 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan03g2439 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan03g2440 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan03g2441 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan08g1474 . 1 737 Strubbelig Receptor Gene Family AT5G06820 53.7 1.0e-192 671.0
Tan11g2046 . 10 685 Strubbelig Receptor Gene Family AT1G78980 61.3 2.8e-192 669.5
Tan04g2828 . 30 717 Strubbelig Receptor Gene Family AT1G78980 52.5 7.0e-151 531.9
Tan06g0048 . 24 690 Strubbelig Receptor Gene Family AT1G78980 53.1 3.2e-135 479.9
Tan11g2046 . 20 663 Strubbelig Receptor Gene Family AT3G13065 53.5 3.8e-141 499.6
Tan05g2855 . 388 680 Strubbelig Receptor Gene Family AT1G11130 53.7 2.5e-84 310.8
Tan08g1474 . 1 737 Strubbelig Receptor Gene Family AT5G06820 53.7 1.0e-192 671.0
Tan02g0246 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0247 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0248 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0249 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan03g2439 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan03g2440 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan03g2441 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan11g2046 . 20 663 Strubbelig Receptor Gene Family AT3G13065 53.5 3.8e-141 499.6
Tan11g2046 . 10 685 Strubbelig Receptor Gene Family AT1G78980 61.3 2.8e-192 669.5
Tan04g2828 . 30 717 Strubbelig Receptor Gene Family AT1G78980 52.5 7.0e-151 531.9
Tan06g0048 . 24 690 Strubbelig Receptor Gene Family AT1G78980 53.1 3.2e-135 479.9
Tan04g2828 . 4 710 Strubbelig Receptor Gene Family AT1G53730 61.7 1.8e-213 740.0
Tan06g0048 . 1 712 Strubbelig Receptor Gene Family AT1G53730 61.3 4.8e-195 678.7
Tan11g2046 . 24 671 Strubbelig Receptor Gene Family AT1G53730 50.6 4.6e-145 512.7
Tan04g2828 . 11 714 Strubbelig Receptor Gene Family AT3G14350 51.9 2.4e-183 639.8
Tan06g0048 . 10 702 Strubbelig Receptor Gene Family AT3G14350 57.4 3.3e-177 619.4
Tan05g2855 . 336 710 Strubbelig Receptor Gene Family AT4G22130 82.2 4.8e-174 608.6
Tan04g2828 . 404 726 Strubbelig Receptor Gene Family AT4G22130 64.6 2.6e-119 426.8
Tan06g0048 . 391 704 Strubbelig Receptor Gene Family AT4G22130 65.5 4.5e-116 416.0
Tan02g0246 . 484 779 Strubbelig Receptor Gene Family AT4G22130 61.3 2.5e-106 383.6
Tan02g0247 . 484 779 Strubbelig Receptor Gene Family AT4G22130 61.3 2.5e-106 383.6
Tan02g0248 . 484 779 Strubbelig Receptor Gene Family AT4G22130 61.3 2.5e-106 383.6
Tan02g0249 . 484 779 Strubbelig Receptor Gene Family AT4G22130 61.3 2.5e-106 383.6
Tan11g2046 . 368 685 Strubbelig Receptor Gene Family AT4G22130 56.3 1.2e-100 364.8
Tan03g2439 . 466 754 Strubbelig Receptor Gene Family AT4G22130 58.1 8.9e-96 348.6
Tan03g2440 . 466 754 Strubbelig Receptor Gene Family AT4G22130 58.1 8.9e-96 348.6
Tan03g2441 . 466 754 Strubbelig Receptor Gene Family AT4G22130 58.1 8.9e-96 348.6
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67530 PF07714 PK_Tyr_Ser-Thr 4.10E-42 CL0016 Tan PK