Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2828 ATGGTGAAGAAATGGAATTGGGGAGAGCCGTTGCTGCTAATCAATATCTGCATTTTGGGATGGAGGGCCAGTTTTATCAATGGAGCTACGGATCCAGGAGATGTGTCTGCTCTGAATGCCATGTATACTAGTTTAAACTCGCCTCCAATTCTAACACTATGGACTGCAACTGGTGGAGATCCATGTGGGCAACTTTGGAAAGGCATTACTTGCTCAGGCTCACGGGTCACAGAAATTTCGTTGTCTGGTTTAGGACTTTCTGGATCACTGGGATACCAGCTCTCAAGTTTAACATCACTAATTAATCTAGACGTGAGTATCAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAGCTAAACCTTGGATGTAATAACTACAGTGGAAGCCTCCCCTATTCTATTTCTCAAATGAGTTTGCTTATTTTCTTGAACATCAGCCACAATCAGCTTCGGAATCAAGTGAACGATATGTTCTGGAAGCTTTCTTCCCTGTCCATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTACCCTCCCCCAGAGTTTTAGCAACCTTACCAGTATGAACTCAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATCGATGTTCTTGCATTTCTTCCTCTACAAAACTTGAATGTCGAGAACAACAATTTTACTGGTTGGGTTCCTGAACGATTGAAGAACATAAATATTCAGGATGGTGGCAATTCTTGGAGCTTTGGACTTGCACCCCCACCTCCGCCTGGTACACCTCCAGCCAACCAAAATTACAGATATCACAAGCCTGGGAACAATTACAGCCCACTGAATAGTGGTGCTGCTGGTGGAGATAGCAGTAGATCAGGAATCAGTGGTGGCGCCATTGCTGGAATTCTTATATCTGTGCTTGTGGTGGGAGCACTACTAGCATATCTCCTTGTAAAGAGAAGATCCAAGAAGTCATCTGCAGACATAGAAAAGCAAAAGCTTGGGGACCAGCCTAGCATATCTCTTGCTTCAAATGCAATGCAAGATTCATTGGCAGAGATGAAGCTTATTCATACTTCATCCTCATTTGATGCAAAAGCATTGGATTCTCCTGCTTCAATCAATCTAAAACCCCCACCTATCGATCGTCATAAATCATTTGATGACAATGATACATCGACAATACCTATTGTGAAGAAGACCAATGTCTCTCCTGAGATAAGTGTGAAGTCATATTCAATCGCAGATCTGCAAATGGCTACGGGCAGTTTCAATGTAGAAAACCTTCTTGGTGAGGGATCATTTGGACGCGTTTATCGGGCTCAGTTCGGCGATGGGAAGGTTCTTGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCTAGAGAATTGTTGGAAGATTTCACAGAGATCGTTGCAAATGTATCTCAGTTGCATCATCCTAATGTAACCGAGCTAATGGGTTATTGCTCAGAGCATGGTCTGCATTTGCTACTATATGAGTTCCATAAGAATGGATCACTACATGATTTCTTGCATATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGTGTCAAGATTGCTTTGGGAACGGCCCGAGCATTAGAGTACCTACATGAAGTTTGTGCACCAACAGTTGTTCACAGAAATATAAAGTCAGCCAATATCTTACTGGATGCTGAACTCAATCCTCATCTCTCCGATTGTGGCTTGGCTAGCTTTATAACAAATCTAGATCAGGCATTAGATCAGCAGGCAGGATCTGGATACAGTGCCCCTGAGGTTACTATGTCTGGTCAATATACATTAAAAAGTGATGTATACAGCTTTGGAGTGGTGATGTTAGAACTTCTATGTGGACGTAAGCCATTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTAGTTCGATGGGCTACGCCTCAGCTCCATGACATCGATGCCTTGACGAAAATGGTCGATCCTGCACTTAAAGGGCTGTACCCTGTCAAGTCTCTCTCAAGATTTGCAGACGTTGTGGCTCTCTGCGTCCAGCCTGAGCCTGAATTCAGACCTCCCATGTCTGAGGTGGTGGAAGCATTGGTTCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGTGATCACGGATCATCTTTTAGAACTGATGAACCTGAGGCACACGAGACATCTTAA 2181 43.51 MVKKWNWGEPLLLINICILGWRASFINGATDPGDVSALNAMYTSLNSPPILTLWTATGGDPCGQLWKGITCSGSRVTEISLSGLGLSGSLGYQLSSLTSLINLDVSINNLGPDIPYQLPQNLQKLNLGCNNYSGSLPYSISQMSLLIFLNISHNQLRNQVNDMFWKLSSLSMLDVSFNFLSGTLPQSFSNLTSMNSMFLQNNQFSGTIDVLAFLPLQNLNVENNNFTGWVPERLKNINIQDGGNSWSFGLAPPPPPGTPPANQNYRYHKPGNNYSPLNSGAAGGDSSRSGISGGAIAGILISVLVVGALLAYLLVKRRSKKSSADIEKQKLGDQPSISLASNAMQDSLAEMKLIHTSSSFDAKALDSPASINLKPPPIDRHKSFDDNDTSTIPIVKKTNVSPEISVKSYSIADLQMATGSFNVENLLGEGSFGRVYRAQFGDGKVLAVKKIDSAAFPRELLEDFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPTVVHRNIKSANILLDAELNPHLSDCGLASFITNLDQALDQQAGSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLCGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDEPEAHETS 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 87719541 87727327 + Tan0012011.1 Tan04g2828 751232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2828 726 MobiDBLite consensus disorder prediction 704 726 - -
Tan04g2828 726 Gene3D Ribonuclease Inhibitor 185 247 IPR032675 -
Tan04g2828 726 Gene3D Phosphorylase Kinase; domain 1 385 498 - -
Tan04g2828 726 Gene3D Transferase(Phosphotransferase) domain 1 500 716 - -
Tan04g2828 726 MobiDBLite consensus disorder prediction 245 286 - -
Tan04g2828 726 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 385 498 - -
Tan04g2828 726 PANTHER LEUCINE RICH REPEAT KINASE 2 298 695 IPR051420 -
Tan04g2828 726 Gene3D Ribonuclease Inhibitor 33 184 IPR032675 -
Tan04g2828 726 ProSiteProfiles Protein kinase domain profile. 421 696 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2828 726 MobiDBLite consensus disorder prediction 265 286 - -
Tan04g2828 726 Pfam Leucine rich repeat 121 178 IPR001611 GO:0005515(InterPro)
Tan04g2828 726 Pfam Protein tyrosine and serine/threonine kinase 423 693 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g2828 726 SUPERFAMILY L domain-like 30 236 - -
Tan04g2828 726 ProSitePatterns Protein kinases ATP-binding region signature. 427 450 IPR017441 GO:0005524(InterPro)
Tan04g2828 726 MobiDBLite consensus disorder prediction 711 726 - -
Tan04g2828 726 SUPERFAMILY Protein kinase-like (PK-like) 402 693 IPR011009 -
Tan04g2828 726 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 499 707 - -
Tan04g2828 726 CDD STKc_IRAK 427 696 - -
Tan04g2828 726 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
Tan04g2828 726 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 31 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2440 Tan-Chr3:77945359 Tan04g2828 Tan-Chr4:87719541 1.50E-114 dispersed
Tan03g2441 Tan-Chr3:77945359 Tan04g2828 Tan-Chr4:87719541 1.50E-114 dispersed
Tan04g2828 Tan-Chr4:87719541 Tan11g2046 Tan-Chr11:43040410 6.60E-168 dispersed
Tan05g2855 Tan-Chr5:80911037 Tan04g2828 Tan-Chr4:87719541 4.10E-146 transposed
Tan04g2828 Tan-Chr4:87719541 Tan06g0048 Tan-Chr6:704598 2.20E-224 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67530 PF07714 PK_Tyr_Ser-Thr 4.10E-42 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2828 - - - 0.0