Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2836 ATGCCCTTTATTAACCCACCAATCCGCACACCAAAAAATCCTCCACCACACATCTCCGATCTTCCCCACCAGACCAAAATGGCACAACCCCCCAATTCCGCCGCTGCCGGAGTTTTCTTCTCCGGCAGCCACAAAAAGAAGAAGCTCTTCATCTTAGCGCTTCTGGCCACCGTCATGGGCGTATCCTCAGACGAGACCATGGTGAGAAGCACGTGCGCCCTCACGCTTTACCCAGAGCTCTGCCAATCGACGATATCGAGCGCCGTCGGAAAGAAGGCCGCGGGGTCGAGTTCAAAAGAGTTGATCGAAGCGTCGGTGAATATTACAATTGCTGCAGTGAAGCATAACTATAAAAACATAAAGAAATTGGTTATGACGACGGAGAATTTGACGAAGAGAGAGAAAATTGCGCTCCATGACTGTCTGGAGACCGGCGAGGAGACGCTGAGAGAGCTGTATGAGGTGGCGGAGGATCTTAAGGAGTATCCAAAGAAGAAAGCTCTGTCGCAATACGCCGATGACCTCAAAACTTTGCTCAGTTCCGCCATTACTAATCAGGAGACATGTCTAGACGGATTTTCACACGACAAAGCCGACAAAAAGGTTCGAAAATCATTAGAAGCAGACCAAATCCACGTCGAAAAATTATGCAGCATTGCATTAGCACTCATCAAAAATCTCACCGACACCGACATCGCCGTCGCCGGTCACAACAGCAACCTGGTCAGCAGAAAGCAGCTCACGGAGGTCGACGGAATTAGCTGGCCGGATTGGCTGCCGGCCGGTGACAGGAGGCTTTTGCAAGCTTCGTCTTCAGCGACGCCGGATGCGGTGGTGGCAGCGGATGGGAGCGGGGATTTCCGGACAGTGTCGGCGGCGGTTGCGGCGGCGCCGGAGAGGAGTAGCCGGAGATATATAATAAGAATAAAGGCGGGGGTTTATAGAGAGAATGTGAATGTGGGGAGTAGTAAGAGGAATATAATGTTTTGGGGAGATGGAAGAACTACTACGATTATCACCGGCAGCAGAAATGTCGTCGACGGCAGCACCACCTTCAACTCCGCCACCGTTGCTGCGGTGGGAGAAAGATTCTTAGCGAGAGACATCACCTTCCAGAACACCGCCGGTCCATCAAAGCACCAAGCGGTAGCTCTCCGGGTCGGCTCCGATCTCTCTGCCTTTTACCGCTGCGACATGCTCGCCTATCAAGACACTCTCTACGTCCACTCCAACCGCCAATTCTACGTCAGTTGCATCATCATCGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGCCGTCATCCAAGACTCCGACATCCACGCCCGCCGCCCCAACCCAGGTCAAAAAAACATGGTCACTGCACAGGGAAGAACCGACCCAAATCAGAACACCGGAATCGTAATCCAGAAATGCAGAATCGGAACCACCTCCGATCTGCGGCCGGTGATAACAAATTTCCCGACGTTCCTGGGGCGGCCGTGGCAGAGATACTCGAGGACGGTGATTATGCAGACCAGTATTAGCAATGTGATTGATCCGGCGGGTTGGCATGTTTGGAATGGGAATTTTGCGCTTGATACTCTGTTTTATGCAGAGTATCAGAACAGTGGGCCCGGCGCCGATACGTCGAGAAGGGTGACGTGGAAGGGATACAGAGTTATTACCAGTGCGGCGGAGGCTCAGAAATTCACGGCCGGAAATTTTATCGGCGGCGGCAGCTGGCTGAGCTCCACCGGATTCCCATTTTCACTTGGGCTGTAG 1764 53.06 MPFINPPIRTPKNPPPHISDLPHQTKMAQPPNSAAAGVFFSGSHKKKKLFILALLATVMGVSSDETMVRSTCALTLYPELCQSTISSAVGKKAAGSSSKELIEASVNITIAAVKHNYKNIKKLVMTTENLTKREKIALHDCLETGEETLRELYEVAEDLKEYPKKKALSQYADDLKTLLSSAITNQETCLDGFSHDKADKKVRKSLEADQIHVEKLCSIALALIKNLTDTDIAVAGHNSNLVSRKQLTEVDGISWPDWLPAGDRRLLQASSSATPDAVVAADGSGDFRTVSAAVAAAPERSSRRYIIRIKAGVYRENVNVGSSKRNIMFWGDGRTTTIITGSRNVVDGSTTFNSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFYVSCIIIGTVDFIFGNAAAVIQDSDIHARRPNPGQKNMVTAQGRTDPNQNTGIVIQKCRIGTTSDLRPVITNFPTFLGRPWQRYSRTVIMQTSISNVIDPAGWHVWNGNFALDTLFYAEYQNSGPGADTSRRVTWKGYRVITSAAEAQKFTAGNFIGGGSWLSSTGFPFSLGL 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 87758132 87763578 + Tan0000123.1 Tan04g2836 751240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2836 587 Gene3D Invertase/pectin methylesterase inhibitor family protein 62 229 IPR035513 -
Tan04g2836 587 PANTHER PECTINESTERASE 51 578 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Tan04g2836 587 ProSitePatterns Pectinesterase signature 1. 301 320 IPR018040 -
Tan04g2836 587 NCBIfam pectinesterase inhibitor domain 52 228 IPR006501 GO:0004857(InterPro)
Tan04g2836 587 Gene3D - 270 587 IPR012334 -
Tan04g2836 587 SUPERFAMILY Pectin lyase-like 272 586 IPR011050 -
Tan04g2836 587 CDD PMEI-like_3 70 228 - -
Tan04g2836 587 FunFam Pectinesterase 270 587 - -
Tan04g2836 587 Pfam Pectinesterase 276 572 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan04g2836 587 Pfam Plant invertase/pectin methylesterase inhibitor 67 223 IPR006501 GO:0004857(InterPro)
Tan04g2836 587 SMART PMEI_2 63 223 IPR006501 GO:0004857(InterPro)
Tan04g2836 587 MobiDBLite consensus disorder prediction 1 18 - -
Tan04g2836 587 ProSitePatterns Pectinesterase signature 2. 420 429 IPR033131 -
Tan04g2836 587 MobiDBLite consensus disorder prediction 1 30 - -
Tan04g2836 587 FunFam Pectinesterase 64 228 - -
Tan04g2836 587 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 228 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2836 Tan-Chr4:87758132 Tan06g1245 Tan-Chr6:13834761 1.30E-182 dispersed
Tan04g2836 Tan-Chr4:87758132 Tan04g2837 Tan-Chr4:87782835 5.10E-102 tandem
Tan04g2836 Tan-Chr4:87758132 Tan06g0058 Tan-Chr6:751932 7.30E-218 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2836 K01051 - csv:101207996 903.279