Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2837 ATGGATTCCGTCAAGTCCTTCAAGGGCTACGGCAAGGTCGACGAGCTCGAACAGCAAGCTTTCCGTCGGAAGACTCGACGTCGATTTATAATTCTCGTTGTCTCTGTTGTTCTTCTAATTGCTGTTGTCATTGGCGCCGTGGTCGGAATCGTGATTCATAAACGGAACTCTTCGTCTTCATCGGCGACGAACTCGGGTCCTCCGACGGAGCTCACTCCGGCCGCCTCACTCAAAACTCTCTGCAGTGTCACTCAGTATCCGAGTTCGTGCCAATCCTCTCTCGGAAACTCCAACACCACCGATCCGGTGTTTCTCTTCAAGCTTTCTCTCCGAGTCGCCACCGATTCGCTCTCTAAACTCGCCGATTACTCCTCCAAGCTCAATTCCACTACTACTGATCCGAATCTCCGAGCCGCAATCGGAGTCTGCCTGAGTGTTTTCGAAGATGCTATAGAGACACTAAACGATACCGTTTCGTCGATGGAAGTGGATCGAAATGGTGAGAAGTTCTTGTCGCCGTCGAGGATTGAAGATCTGAAAACCTGGCTGAGCACCACCATCACCGACCAAGAAACCTGCCTCGACGCCGTTCGAGATCTGAACCAGACGGCGGTTCTCCAAGAATTACAAACGGCAATGGCGAACTCGACCGAGTTCACCAGCAATAGTTTAGCGATTGTAACGAAAATCCTGGGGCTGTTGTCGGATTTCAACATCCCAATCCACCGGAGGCTGATGGGGTTTCCGGAGTGGGTGAGCTCCGGAGACCGGAGGCTTCTGCAGGAGAAGAATGTGACGGCGCATGTGACGGTGTCGAAGGACGGGAATGGGGATTTCACGACGATCAAAGCCGCCGTAGCGGCGGTGCCAAAGAAGAGTAAAGAAAGATTCATCATATATGTAAAAGAAGGAATATACGAAGAGAATGTGATTCTGGATAAGAGCAAGTGGAATGTTATGATGTACGGAGATGGAAGAACCAGAACCATTATTTCCGGCCGCCTGAACTTCATCGACGGCACTCCCACCTTCTCCACCGCCACTTTTGCTGTGGCTGGCAAAGGCTTCATTGGCAAGGACATGGGCTTCATCAACACCGCCGGTCCGGCCAAGCATCAGGCCGTCGCTTTCCGCTCCGGCTCCGATCTCTCTGTTATGTCCGGATGCTCATTCGATGCCTATCAAGACACTCTCTACGCTCATTCCAACCGTCAATTCTATCGAGACTGCGACATCACCGGCACCATCGACTTCATCTTCGGCAATGCCGCCGTCGTCTTCCAGAGCTGCAACATCCGGCCGAGGCAGCCGCTTCCCAATCAGTTCAACACCATCACAGCTCAAGGCAAAAAGGACATCAACCAAAACTCTGGCATTTCCATTCAGAAATGCTCTTTTTCGGCCTACAACGATAGTCTCTCCGCCCCGACTTACTTGGGCCGGCCATGGAAAGAATTCTCGACCACCGTGATTATGCAGTCGGAGATCGGCGATTTCCTGCAGCCGGTCGGGTGGAAGGAGTGGGTCAGCGGGCAGGACCCGCCAAGCACTATATTTTACGGCGAGTATCGGAATAGTGGGCCTGGATCCAACGTGGATAAAAGAGTTAAATGGGTTGGTTACAGGCCCAGTCTTACTGACGCCGATGCCGGAAAGTTCACCGTCGGAACCTTCCTCAACGGCCAGGATTGGTTGCCGGCCACCAGTGTAAAATTTGATTCGTCCTTATGA 1731 52.4 MDSVKSFKGYGKVDELEQQAFRRKTRRRFIILVVSVVLLIAVVIGAVVGIVIHKRNSSSSSATNSGPPTELTPAASLKTLCSVTQYPSSCQSSLGNSNTTDPVFLFKLSLRVATDSLSKLADYSSKLNSTTTDPNLRAAIGVCLSVFEDAIETLNDTVSSMEVDRNGEKFLSPSRIEDLKTWLSTTITDQETCLDAVRDLNQTAVLQELQTAMANSTEFTSNSLAIVTKILGLLSDFNIPIHRRLMGFPEWVSSGDRRLLQEKNVTAHVTVSKDGNGDFTTIKAAVAAVPKKSKERFIIYVKEGIYEENVILDKSKWNVMMYGDGRTRTIISGRLNFIDGTPTFSTATFAVAGKGFIGKDMGFINTAGPAKHQAVAFRSGSDLSVMSGCSFDAYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQSCNIRPRQPLPNQFNTITAQGKKDINQNSGISIQKCSFSAYNDSLSAPTYLGRPWKEFSTTVIMQSEIGDFLQPVGWKEWVSGQDPPSTIFYGEYRNSGPGSNVDKRVKWVGYRPSLTDADAGKFTVGTFLNGQDWLPATSVKFDSSL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 87782835 87786319 + Tan0006536.1 Tan04g2837 751241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2837 576 FunFam Pectinesterase 73 231 - -
Tan04g2837 576 Gene3D - 262 576 IPR012334 -
Tan04g2837 576 PANTHER PECTINESTERASE 29 567 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Tan04g2837 576 NCBIfam pectinesterase inhibitor domain 59 230 IPR006501 GO:0004857(InterPro)
Tan04g2837 576 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Tan04g2837 576 Pfam Pectinesterase 268 561 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan04g2837 576 Pfam Plant invertase/pectin methylesterase inhibitor 76 226 IPR006501 GO:0004857(InterPro)
Tan04g2837 576 SUPERFAMILY Pectin lyase-like 266 573 IPR011050 -
Tan04g2837 576 FunFam Pectinesterase 262 576 - -
Tan04g2837 576 SMART PMEI_2 72 226 IPR006501 GO:0004857(InterPro)
Tan04g2837 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 231 IPR035513 -
Tan04g2837 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 230 IPR035513 -
Tan04g2837 576 CDD PMEI-like_3 79 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2837 Tan-Chr4:87782835 Tan05g2710 Tan-Chr5:78979028 6.20E-129 dispersed
Tan04g2836 Tan-Chr4:87758132 Tan04g2837 Tan-Chr4:87782835 5.10E-102 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2837 - - - 0.0