Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2843 ATGATGCTTCATTCAGTAGGAGCTGCTAGACAAACTTGTAGCTTACTTGCTGTTACCTGCGGAAGTGTGCCTAAAGTAAAATGCGAGGAGGATGTTGCTGAGGATAAATTAAAATACCCCTTTCCAGAATTAGTCTCTTCTGGACGATTGGAGGTCCGAGTTCTGACAAATCCAAACAAGGATGAGTTTAGTAGAATTGTAGAATCTTGTCAACCGAGCTTCGTCTACTTGCAAGGGGAACAACTTGAGAATGACGAAATTGGGACTTTGGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTGTGTGGACTATTCAATACTGCATTACCAACCACCGTGTATTTAGAAGTCCCAAATGGAGGCAGAATAGCGGAGACTCTTCGTTCTAAGGGAATTCCGTATGTCATATATTGGAACAACACATTTTCTTGTTATGCTGCAACTCATTTCCGTAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCTTTTAGGCTTCATTGTGTGGGGAGCAATTATGCCCTTCCTGGGAATGCTGACGATATTAGGAGTGATCTAGAGCCTCAGCTTATTGGGGAACCTCTAAAAATTAACGTTGAACCCCCCGAGATAGATGCAGGTGAAGATGAAGATGGTTCTTTAGAAACCCTCCCTGCCATAAGTATACATGATAATAATGTGACTATGAGATTTCTCATCTGTGGAGTGCCTTGCACACCGGATGCGTGCTTATTGAGTTCATTGGAGGATGGCCTTAATGCCCTTTTGAACATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCACCACCTCTTCAAGCAGGATCCTTTTCTCGGGGTGTTGTTACAATGCGATGTGATATAGTGACCTGTAGTTCAGCCCACATCTCAGTATTGGTGTCTGGTAGTGCTCATACTTGTTTTGATGATCAGCTGTTGGAGAAACATATCAAACATGAGATTATTGAAAATAGCCAATTAGTTCATGCCATGCATGATTGTGAGGGCAACAAACATCACATGCACGAGCCTCGAAAATCCGCTGCAGTTGCTTGTGGGGCAACAGTATTTGAGGTTTCCATGAAGGTTCCCGCATGGGCATCACAGGTCTTGAGGCAACTAGCACCCGATATGTCATTTCGGAGTTTAGTTGCACTTGGCATTGCGGGAGTTCAGGGTTTGCCTGTTGCTTCTTTTGAGAAAGAGGATGCGGAGCGGTTGCTCTTCTTCTGTTCAAGGGATGAGAACGCTAAACATTCAGATCAGTTTCTTGTGAGTGTATTGCCCAGCTGGTTTAAACCACCTACTCCTAGTAGAAAGAGAGTGGAACCAAGCCAAGGAATGAGGAGTTCTCTTTCACATGATGGTCTTGCATATGCAAATATCCCTTCTATTAGAAGAGTAGGTGGAGAGCCTGCACCAATGAATGGGTTTAAGGCACCCTTACTCCCAGCTAGGAAAAGATTAAAAGTAGCCACAATGAGGCCGATTCCACGTGTGCATAGGAATAAAATGACACCTTTCTCTGGATTGACTGAAGCAGATAGAAACAATGGAGGCCAACCCAAGGCTAGTTTGCCCGTCATTACCCCGTCGAAGCATGTAACTGTAGGATCAACTTCTGCAACACAAAGAAAATCTTTATCAAGCTCATCTCAGTCTAAACAGCAAATTATTCCCTTAAATCCACTACCTTTAAAGAAACATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCCGAGGAGGAGTTCTTGAAGGATGTTATGGAGTTTTTACTACTTAGAGGACATCCGCGACTTATTCCTCAAGGTGGAGTTGAGGAGTTCCCAGATGCCATACTCAACGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTAATGTCGGCAATGGTATCAATTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACGATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTACGAGACTTACCTTCTAGAGTATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGCCTTTTGTGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGCGGTATTTGTGGTGAATGGGCCCATTTTGGGTGCGACCGGAGGCAGGGTCTTGGTGCATTTAAGTGCAATAGAAAGCTTAGAACTGTAATAATGAATTTGGTTCATTCGTATATGTTAATATTTTTGTTGATTTTTTTTAATGACATTATGGAAATGTTGATGATTTCACATGTTGAAAGTGGGTCAAATGTGGATAGCAACTTAAATTGGGTTATAATTAATATCTTGAAAACCAAATCTTTAAAAAATGGAGGCTGGAAAAAATTTCTTATCACTTTATTATCGTTATTACTCTTATTATATATATAA 2469 42.12 MMLHSVGAARQTCSLLAVTCGSVPKVKCEEDVAEDKLKYPFPELVSSGRLEVRVLTNPNKDEFSRIVESCQPSFVYLQGEQLENDEIGTLVWNGVDLSLEDLCGLFNTALPTTVYLEVPNGGRIAETLRSKGIPYVIYWNNTFSCYAATHFRNALLSVVQSSSTHTWDAFQLAHAAFRLHCVGSNYALPGNADDIRSDLEPQLIGEPLKINVEPPEIDAGEDEDGSLETLPAISIHDNNVTMRFLICGVPCTPDACLLSSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISVLVSGSAHTCFDDQLLEKHIKHEIIENSQLVHAMHDCEGNKHHMHEPRKSAAVACGATVFEVSMKVPAWASQVLRQLAPDMSFRSLVALGIAGVQGLPVASFEKEDAERLLFFCSRDENAKHSDQFLVSVLPSWFKPPTPSRKRVEPSQGMRSSLSHDGLAYANIPSIRRVGGEPAPMNGFKAPLLPARKRLKVATMRPIPRVHRNKMTPFSGLTEADRNNGGQPKASLPVITPSKHVTVGSTSATQRKSLSSSSQSKQQIIPLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHPRLIPQGGVEEFPDAILNGKRLDLYNLYKEVVTRGGFNVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKCNRKLRTVIMNLVHSYMLIFLLIFFNDIMEMLMISHVESGSNVDSNLNWVIINILKTKSLKNGGWKKFLITLLSLLLLLYI 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 87807781 87813809 + Tan0011715.1 Tan04g2843 751247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2843 822 SMART ARID_2 592 695 - -
Tan04g2843 822 MobiDBLite consensus disorder prediction 519 573 - -
Tan04g2843 822 MobiDBLite consensus disorder prediction 549 573 - -
Tan04g2843 822 Gene3D - 589 705 IPR036431 GO:0003677(InterPro)
Tan04g2843 822 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 741 IPR042293 -
Tan04g2843 822 Pfam ARID/BRIGHT DNA binding domain 598 695 IPR001606 GO:0003677(InterPro)
Tan04g2843 822 SUPERFAMILY ARID-like 595 710 IPR036431 GO:0003677(InterPro)
Tan04g2843 822 ProSiteProfiles ARID domain profile. 595 699 IPR001606 GO:0003677(InterPro)
Tan04g2843 822 CDD ARID 597 695 - -
Tan04g2843 822 MobiDBLite consensus disorder prediction 527 542 - -
Tan04g2843 822 SMART bright_3 596 700 IPR001606 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2843 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2843 Tan-Chr4:87807781 Tan06g0071 Tan-Chr6:802185 7.00E-291 dispersed
Tan04g2843 Tan-Chr4:87807781 Tan06g0070 Tan-Chr6:802185 7.00E-291 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g2305 . 1 368 ARID Transcription Factor Family AT1G04880 57.9 3.6e-108 389.4
Tan06g2306 . 1 368 ARID Transcription Factor Family AT1G04880 57.9 3.6e-108 389.4
Tan06g2304 . 1 368 ARID Transcription Factor Family AT1G04880 57.9 3.6e-108 389.4
Tan06g2310 . 1 305 ARID Transcription Factor Family AT1G04880 54.0 1.2e-79 294.7
Tan06g2311 . 1 305 ARID Transcription Factor Family AT1G04880 54.0 1.2e-79 294.7
Tan06g2312 . 1 305 ARID Transcription Factor Family AT1G04880 54.0 1.2e-79 294.7
Tan01g5166 . 121 417 ARID Transcription Factor Family AT1G20910 64.0 1.8e-103 373.6
Tan11g1966 . 209 480 ARID Transcription Factor Family AT1G20910 60.1 9.6e-89 324.7
Tan08g2268 . 194 491 ARID Transcription Factor Family AT1G20910 57.2 2.8e-88 323.2
Tan01g5167 . 121 386 ARID Transcription Factor Family AT1G20910 62.0 4.5e-86 315.8
Tan01g5063 . 16 309 ARID Transcription Factor Family AT1G76110 68.2 1.0e-110 397.5
Tan01g5166 . 138 447 ARID Transcription Factor Family AT1G76510 72.8 2.6e-127 453.0
Tan11g1966 . 188 510 ARID Transcription Factor Family AT1G76510 60.3 6.0e-108 388.7
Tan08g2268 . 180 512 ARID Transcription Factor Family AT1G76510 58.9 1.1e-106 384.4
Tan01g5167 . 138 386 ARID Transcription Factor Family AT1G76510 69.7 6.4e-94 342.0
Tan06g0070 . 3 771 ARID Transcription Factor Family AT3G43240 57.5 6.8e-261 897.5
Tan06g0071 . 3 771 ARID Transcription Factor Family AT3G43240 57.5 6.8e-261 897.5
Tan04g2843 . 2 741 ARID Transcription Factor Family AT3G43240 58.9 1.7e-248 856.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27350 PF01388 ARID 2.70E-14 CL0123 Tan TR