Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2843 ATGATGCTTCATTCAGTAGGAGCTGCTAGACAAACTTGTAGCTTACTTGCTGTTACCTGCGGAAGTGTGCCTAAAGTAAAATGCGAGGAGGATGTTGCTGAGGATAAATTAAAATACCCCTTTCCAGAATTAGTCTCTTCTGGACGATTGGAGGTCCGAGTTCTGACAAATCCAAACAAGGATGAGTTTAGTAGAATTGTAGAATCTTGTCAACCGAGCTTCGTCTACTTGCAAGGGGAACAACTTGAGAATGACGAAATTGGGACTTTGGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTGTGTGGACTATTCAATACTGCATTACCAACCACCGTGTATTTAGAAGTCCCAAATGGAGGCAGAATAGCGGAGACTCTTCGTTCTAAGGGAATTCCGTATGTCATATATTGGAACAACACATTTTCTTGTTATGCTGCAACTCATTTCCGTAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCTTTTAGGCTTCATTGTGTGGGGAGCAATTATGCCCTTCCTGGGAATGCTGACGATATTAGGAGTGATCTAGAGCCTCAGCTTATTGGGGAACCTCTAAAAATTAACGTTGAACCCCCCGAGATAGATGCAGGTGAAGATGAAGATGGTTCTTTAGAAACCCTCCCTGCCATAAGTATACATGATAATAATGTGACTATGAGATTTCTCATCTGTGGAGTGCCTTGCACACCGGATGCGTGCTTATTGAGTTCATTGGAGGATGGCCTTAATGCCCTTTTGAACATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCACCACCTCTTCAAGCAGGATCCTTTTCTCGGGGTGTTGTTACAATGCGATGTGATATAGTGACCTGTAGTTCAGCCCACATCTCAGTATTGGTGTCTGGTAGTGCTCATACTTGTTTTGATGATCAGCTGTTGGAGAAACATATCAAACATGAGATTATTGAAAATAGCCAATTAGTTCATGCCATGCATGATTGTGAGGGCAACAAACATCACATGCACGAGCCTCGAAAATCCGCTGCAGTTGCTTGTGGGGCAACAGTATTTGAGGTTTCCATGAAGGTTCCCGCATGGGCATCACAGGTCTTGAGGCAACTAGCACCCGATATGTCATTTCGGAGTTTAGTTGCACTTGGCATTGCGGGAGTTCAGGGTTTGCCTGTTGCTTCTTTTGAGAAAGAGGATGCGGAGCGGTTGCTCTTCTTCTGTTCAAGGGATGAGAACGCTAAACATTCAGATCAGTTTCTTGTGAGTGTATTGCCCAGCTGGTTTAAACCACCTACTCCTAGTAGAAAGAGAGTGGAACCAAGCCAAGGAATGAGGAGTTCTCTTTCACATGATGGTCTTGCATATGCAAATATCCCTTCTATTAGAAGAGTAGGTGGAGAGCCTGCACCAATGAATGGGTTTAAGGCACCCTTACTCCCAGCTAGGAAAAGATTAAAAGTAGCCACAATGAGGCCGATTCCACGTGTGCATAGGAATAAAATGACACCTTTCTCTGGATTGACTGAAGCAGATAGAAACAATGGAGGCCAACCCAAGGCTAGTTTGCCCGTCATTACCCCGTCGAAGCATGTAACTGTAGGATCAACTTCTGCAACACAAAGAAAATCTTTATCAAGCTCATCTCAGTCTAAACAGCAAATTATTCCCTTAAATCCACTACCTTTAAAGAAACATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCCGAGGAGGAGTTCTTGAAGGATGTTATGGAGTTTTTACTACTTAGAGGACATCCGCGACTTATTCCTCAAGGTGGAGTTGAGGAGTTCCCAGATGCCATACTCAACGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTAATGTCGGCAATGGTATCAATTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACGATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTACGAGACTTACCTTCTAGAGTATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGCCTTTTGTGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGCGGTATTTGTGGTGAATGGGCCCATTTTGGGTGCGACCGGAGGCAGGGTCTTGGTGCATTTAAGTGCAATAGAAAGCTTAGAACTGTAATAATGAATTTGGTTCATTCGTATATGTTAATATTTTTGTTGATTTTTTTTAATGACATTATGGAAATGTTGATGATTTCACATGTTGAAAGTGGGTCAAATGTGGATAGCAACTTAAATTGGGTTATAATTAATATCTTGAAAACCAAATCTTTAAAAAATGGAGGCTGGAAAAAATTTCTTATCACTTTATTATCGTTATTACTCTTATTATATATATAA 2469 42.12 MMLHSVGAARQTCSLLAVTCGSVPKVKCEEDVAEDKLKYPFPELVSSGRLEVRVLTNPNKDEFSRIVESCQPSFVYLQGEQLENDEIGTLVWNGVDLSLEDLCGLFNTALPTTVYLEVPNGGRIAETLRSKGIPYVIYWNNTFSCYAATHFRNALLSVVQSSSTHTWDAFQLAHAAFRLHCVGSNYALPGNADDIRSDLEPQLIGEPLKINVEPPEIDAGEDEDGSLETLPAISIHDNNVTMRFLICGVPCTPDACLLSSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISVLVSGSAHTCFDDQLLEKHIKHEIIENSQLVHAMHDCEGNKHHMHEPRKSAAVACGATVFEVSMKVPAWASQVLRQLAPDMSFRSLVALGIAGVQGLPVASFEKEDAERLLFFCSRDENAKHSDQFLVSVLPSWFKPPTPSRKRVEPSQGMRSSLSHDGLAYANIPSIRRVGGEPAPMNGFKAPLLPARKRLKVATMRPIPRVHRNKMTPFSGLTEADRNNGGQPKASLPVITPSKHVTVGSTSATQRKSLSSSSQSKQQIIPLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHPRLIPQGGVEEFPDAILNGKRLDLYNLYKEVVTRGGFNVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKCNRKLRTVIMNLVHSYMLIFLLIFFNDIMEMLMISHVESGSNVDSNLNWVIINILKTKSLKNGGWKKFLITLLSLLLLLYI 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 87807781 87813809 + Tan0011715.1 Tan04g2843 751247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2843 822 SMART ARID_2 592 695 - -
Tan04g2843 822 MobiDBLite consensus disorder prediction 519 573 - -
Tan04g2843 822 MobiDBLite consensus disorder prediction 549 573 - -
Tan04g2843 822 Gene3D - 589 705 IPR036431 GO:0003677(InterPro)
Tan04g2843 822 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 741 IPR042293 -
Tan04g2843 822 Pfam ARID/BRIGHT DNA binding domain 598 695 IPR001606 GO:0003677(InterPro)
Tan04g2843 822 SUPERFAMILY ARID-like 595 710 IPR036431 GO:0003677(InterPro)
Tan04g2843 822 ProSiteProfiles ARID domain profile. 595 699 IPR001606 GO:0003677(InterPro)
Tan04g2843 822 CDD ARID 597 695 - -
Tan04g2843 822 MobiDBLite consensus disorder prediction 527 542 - -
Tan04g2843 822 SMART bright_3 596 700 IPR001606 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2843 Tan-Chr4:87807781 Tan06g0071 Tan-Chr6:802185 7.00E-291 dispersed
Tan04g2843 Tan-Chr4:87807781 Tan06g0070 Tan-Chr6:802185 7.00E-291 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27350 PF01388 ARID 2.70E-14 CL0123 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2843 - - - 0.0