Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2865 ATGGAGCCGTCTCATGAAGTTTCAGAAACGCCGGAGCAAATTATACTACGCTGGGACTCCGCCGCGCCGGAGGAAGTAAAAGATAAGATGATTTTTGATTCCGACAGGGAAGAGATCGACCGATACTTGCAGGCCGTCGACGAAATCCAGAGGTCGATGTCGTCGGCTTCGTTATCGGATGATCAGAACAAAGTCGATTCCGCTATGCAGATCGCCATGGCCAGGCTTGAGGACGAGTTCCGTCACATTCTGTCCAGTCACACGACTCCCATCGAGGTCGAGTCGCTTACTGATCCGAGTCCTTCTTCTCGCTCCATGTCGACTAGCGCCAGTGGTGTATTCGAGGATGAAAACGACGAGGAAGCGGATTTGCCGGAAGTTCAGCTCGATTTAACTGGTAGTCCAAGTTTCGGGTCAAGTGGACGATCGAGCTATCGAGCGACGAGCAGTATTCGTGAAATTGATCTGATACCTTCGGATGCGATTATCGATCTACGAAGTATTGCCGAGCGGATGATATCGGCGGGGTACCTGCGGGAGTGCATCCAAGTCTATGGCAGTGTGCGAAAGTCCACCTTCGACTCCAGCTTCAGACGGCTTGGAATTGAGAAACTGAGCATTGGAGATATCCAGAGGTTGGATTGGAACGAGCTGGAGACGAAGATCAGAAGGTGGATTAGAGCGGCAAAGGTTTCTATTAGGACTTTGTTTTCCAGCGAGAAGAAGCTCTGCGAGCAAATCTTTTATGGCATAGGGACCGCCATAGACGATGCTTGTTTCATGGAGACTGTTAAAGGCCCTGTGACTCAGTTGTTCAATTTTGCCGAAGCGATCAGTATAAGCCGCAGATCGCCGGAGAAGCTGTTCAAGATTCTAGACCTCCACGATGCCATAACGGATTTGATACCTGACATTGATGTGATATTCGAATCAAAATCCGCGGAATATATTCGGATTCAGGCGGCGGAGATTTTGTCGCGGCTGGCGGAGGCCGTCAGAGGGACTTTATCGGAGTTTGAAAACGCGGTGCTGCGAGAGCCGTCGCTGCATCCGGTGCCCGGCGGGACGCTTCATCCGTTGACAAGGTATGTAATGAACTATGTGAGTCTGATTTCCGATTACAAAGTGACCTTAGACGAGCTCATCGTGTCCAAACCATCGACGGGCTCGAGGTACTCGGCCGACCCCACAACCCCAGATATGGATTTCGCTGAGCTAGAGGGCAAAACGCCATTAGCGCTCCATCTGATATGGAGCATCGTGATTCTGCAGTTCAATTTGGAGGGCAAGTCCAGGCACTACAAAGACCCTTCTCTAGCTCATCTCTTCATCATGAACAACGTTCATTACATCGTTCAGAAGATAAAAGGATCCCCAGAATTGCGAGAAATGATCGGAGACGTTTATCTGAAAAGGATGACCGGGAAGTTTCGACAGGCGGCGACAAACTACGAGAGAACAACATGGGTGAATGTGCTGTATTGCCTACGAAACGAAGGGTTGAATGTGGGCGGGAGCTTTTCTTCCGCCCCCTCAAAGAGCGCTATTAGAGAGAGATTCAAGACTTTCAACGCCATGTTTGAGGAGGTTCACAGGACACAGTCGGCATGGTTGATACCAGATTCTCAGCTGAGGGAGGAGCTTCGCATATCCATTACTGAGAAGTTGATTCCAGCATACAGGTCGTTTCTTGGCCTCCATGGCCACCACATAGAGAGTGGAAGGCACCCAGAAAATTACATCAAGTACTCGGTCGAGGAACTGGAAAATGCCATCTTGGATTTCTTTGAGGGTTGCTCAGTAACCCATAACTTGAGAAGGAGATCTCACTGA 1833 49.86 MEPSHEVSETPEQIILRWDSAAPEEVKDKMIFDSDREEIDRYLQAVDEIQRSMSSASLSDDQNKVDSAMQIAMARLEDEFRHILSSHTTPIEVESLTDPSPSSRSMSTSASGVFEDENDEEADLPEVQLDLTGSPSFGSSGRSSYRATSSIREIDLIPSDAIIDLRSIAERMISAGYLRECIQVYGSVRKSTFDSSFRRLGIEKLSIGDIQRLDWNELETKIRRWIRAAKVSIRTLFSSEKKLCEQIFYGIGTAIDDACFMETVKGPVTQLFNFAEAISISRRSPEKLFKILDLHDAITDLIPDIDVIFESKSAEYIRIQAAEILSRLAEAVRGTLSEFENAVLREPSLHPVPGGTLHPLTRYVMNYVSLISDYKVTLDELIVSKPSTGSRYSADPTTPDMDFAELEGKTPLALHLIWSIVILQFNLEGKSRHYKDPSLAHLFIMNNVHYIVQKIKGSPELREMIGDVYLKRMTGKFRQAATNYERTTWVNVLYCLRNEGLNVGGSFSSAPSKSAIRERFKTFNAMFEEVHRTQSAWLIPDSQLREELRISITEKLIPAYRSFLGLHGHHIESGRHPENYIKYSVEELENAILDFFEGCSVTHNLRRRSH 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 87956744 87959846 + Tan0018739.1 Tan04g2865 751269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2865 610 Pfam Exo70 exocyst complex subunit C-terminal 224 594 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Tan04g2865 610 SUPERFAMILY Cullin repeat-like 7 597 IPR016159 -
Tan04g2865 610 MobiDBLite consensus disorder prediction 90 113 - -
Tan04g2865 610 MobiDBLite consensus disorder prediction 1 20 - -
Tan04g2865 610 Gene3D Exocyst complex component Exo70 134 606 - -
Tan04g2865 610 Gene3D Exocyst complex component Exo70 14 121 - -
Tan04g2865 610 MobiDBLite consensus disorder prediction 90 122 - -
Tan04g2865 610 PANTHER EXOCYST COMPLEX PROTEIN EXO70 12 598 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Tan04g2865 610 Pfam Exocyst complex component Exo70 N-terminal 12 85 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2865 K07195 - - csv:101204229 1119.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2865 Tan-Chr4:87956744 Tan09g2370 Tan-Chr9:73415933 7.60E-125 dispersed
Tan04g2865 Tan-Chr4:87956744 Tan05g2961 Tan-Chr5:81690153 6.80E-126 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0719 . 10 653 EXO70 exocyst subunit family AT5G03540 76.1 2.5e-283 971.8
Tan03g1260 . 1 638 EXO70 exocyst subunit family AT5G03540 71.1 9.7e-267 916.8
Tan04g2073 . 9 303 EXO70 exocyst subunit family AT5G03540 59.5 2.4e-108 390.6
Tan03g1260 . 1 638 EXO70 exocyst subunit family AT5G52340 79.6 3.8e-297 1017.7
Tan04g0719 . 12 653 EXO70 exocyst subunit family AT5G52340 73.7 4.0e-270 927.9
Tan04g2073 . 4 303 EXO70 exocyst subunit family AT5G52340 59.9 1.3e-116 417.9
Tan03g0677 . 1 130 EXO70 exocyst subunit family AT5G52340 51.2 4.0e-44 177.2
Tan03g1260 . 145 631 EXO70 exocyst subunit family AT5G52350 63.5 1.3e-174 610.5
Tan04g0719 . 147 653 EXO70 exocyst subunit family AT5G52350 59.3 1.4e-165 580.5
Tan08g2409 . 1 628 EXO70 exocyst subunit family AT5G58430 67.2 9.4e-248 853.6
Tan08g2409 . 1 627 EXO70 exocyst subunit family AT1G07000 52.0 4.2e-176 615.5
Tan10g1341 . 59 672 EXO70 exocyst subunit family AT5G13150 53.3 1.5e-174 610.5
Tan11g1421 . 141 712 EXO70 exocyst subunit family AT5G13150 50.2 2.2e-162 570.1
Tan11g1421 . 114 713 EXO70 exocyst subunit family AT5G13990 53.1 7.4e-185 644.8
Tan04g2865 . 9 609 EXO70 exocyst subunit family AT1G72470 65.0 2.3e-217 752.7
Tan04g2865 . 9 607 EXO70 exocyst subunit family AT1G54090 62.3 1.6e-210 729.9
Tan04g2865 . 9 608 EXO70 exocyst subunit family AT3G14090 64.8 1.2e-221 766.9
Tan05g2961 . 16 652 EXO70 exocyst subunit family AT5G50380 65.0 1.8e-236 816.2
Tan09g2370 . 14 651 EXO70 exocyst subunit family AT5G50380 62.7 2.2e-229 792.7
Tan02g2612 . 13 669 EXO70 exocyst subunit family AT4G31540 71.9 9.9e-283 969.9
Tan04g0347 . 20 621 EXO70 exocyst subunit family AT3G55150 50.6 1.7e-156 550.4
Tan04g0347 . 24 613 EXO70 exocyst subunit family AT2G39380 51.2 1.2e-157 554.3
Tan08g1964 . 26 631 EXO70 exocyst subunit family AT3G09520 55.4 1.2e-178 624.0
Tan05g0340 . 16 600 EXO70 exocyst subunit family AT5G59730 50.6 7.8e-157 551.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007044 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 36