Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2886 ATGCAACTGTCTGTGGAATCATCATCCTCTGCTGAGATTATAGCTATAGGGAGAGAGAGCTCTGTTAGTGATGATGATGTACACAATCTCAATGTTGATGAAACTTGTCGTCTGGTGAATGCAGACCAACCACAATGTCGGATATGCCTCGACACTGGAGGAGAAGATTTAATTGCTCCATGCCACTGCAAAGGCACTCAAAAGTATGTCCATAGATCATGTCTGGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCGTGTTACGTGCAAATGTCCCTCCTGATCGCTGGTGGTTGAGACTGAAATTTCAGTTTCTCGTTGCTAGGGACCATGCGTTCATTTTCATCATTGTTCAGCTGATTGTGGCATTCTTGGGGGTGTTGGTGTACAAATTCTACGGGGAGGAACTAAGGGAAATGTTTGGTTACGAAGAACACCCATATGGGTTCTATGCCATGGCTGTATTGGCTATCATCTTGGTTGGTTTACTCTATGGTTTCTTCATAGCGATTATATGCGGGCAGAGGATAAATGAACGTCACTACCATGTCCTTGCTAAGCAAGAACTGACAAAGGAATATATAGTCGAAGATCGAGAACATAACAAAAATGTTCCTGAACTGGATCCCAGTCATGTTATGGAGCTAAGGATGTTGGGCCTGTATTAA 702 43.45 MQLSVESSSSAEIIAIGRESSVSDDDVHNLNVDETCRLVNADQPQCRICLDTGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLY 233
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 88039933 88044743 - Tan0011622.1 Tan04g2886 751290
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2886 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 98 IPR013083 -
Tan04g2886 233 Pfam RING-variant domain 46 93 IPR011016 GO:0008270(InterPro)
Tan04g2886 233 SMART ringv_2 45 94 IPR011016 GO:0008270(InterPro)
Tan04g2886 233 ProSiteProfiles Zinc finger RING-CH-type profile. 38 100 IPR011016 GO:0008270(InterPro)
Tan04g2886 233 SUPERFAMILY RING/U-box 41 97 - -
Tan04g2886 233 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 164 233 - -
Tan04g2886 233 CDD RING_CH-C4HC3_MARCH 46 94 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2886 Tan-Chr4:88039933 Tan04g2888 Tan-Chr4:88039933 7.90E-115 dispersed
Tan04g2886 Tan-Chr4:88039933 Tan04g2887 Tan-Chr4:88039933 1.30E-93 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2886 - - - 0.0