Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2887 ATGCAACTGTCTGTGGAATCATCATCCTCTGCTGAGATTATAGCTATAGGGAGAGAGAGCTCTGTTAGTGATGATGATGTACACAATCTCAATGTTGATGAAACTTGTCGTCTGGTGAATGCAGACCAACCACAATGTCGGATATGCCTCGACACTGGAGGAGAAGATTTAATTGCTCCATGCCACTGCAAAGGCACTCAAAAGTATGTCCATAGATCATGTCTGGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCGTGTTACGTGCAAATGTCCCTCCTGATCGCTGGTGGTTGAGACTGAAATTTCAGTTTCTCGTTGCTAGGGACCATGCGTTCATTTTCATCATTGTTCAGCTGATTGTGGCATTCTTGGGGGTGTTGGTGTACAAATTCTACGGGGAGGAACTAAGGGAAATGTTTGGTTACGAAGAACACCCATATGGGTTCTATGCCATGGCTGGTATACTGAAGCTGCCGACTAACTCCTTACTTTTTATTCTTCTTTATATATGTATTGCATTTATTAGTTATTGGCTATCATCTTGGTTGGTTTACTCTATGGTTTCTTCATAG 609 42.53 MQLSVESSSSAEIIAIGRESSVSDDDVHNLNVDETCRLVNADQPQCRICLDTGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAGILKLPTNSLLFILLYICIAFISYWLSSWLVYSMVSS 202
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 88039933 88044743 - Tan0011622.2 Tan04g2887 751291
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2887 202 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 10 180 - -
Tan04g2887 202 SUPERFAMILY RING/U-box 41 97 - -
Tan04g2887 202 SMART ringv_2 45 94 IPR011016 GO:0008270(InterPro)
Tan04g2887 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 98 IPR013083 -
Tan04g2887 202 ProSiteProfiles Zinc finger RING-CH-type profile. 38 100 IPR011016 GO:0008270(InterPro)
Tan04g2887 202 Pfam RING-variant domain 46 93 IPR011016 GO:0008270(InterPro)
Tan04g2887 202 CDD RING_CH-C4HC3_MARCH 46 94 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2887 Tan-Chr4:88039933 Tan09g1394 Tan-Chr9:66071587 2.40E-27 dispersed
Tan04g2886 Tan-Chr4:88039933 Tan04g2887 Tan-Chr4:88039933 1.30E-93 tandem
Tan04g2887 Tan-Chr4:88039933 Tan04g2888 Tan-Chr4:88039933 1.50E-93 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2887 - - - 0.0