Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan04g2888 | ATGCAACTGTCTGTGGAATCATCATCCTCTGCTGAGATTATAGCTATAGGGAGAGAGAGCTCTGTTAGTGATGATGATGTACACAATCTCAATGTTGATGAAACTTGTCGTCTGGTGAATGCAGACCAACCACAATGTCGGATATGCCTCGACACTGGAGGAGAAGATTTAATTGCTCCATGCCACTGCAAAGGCACTCAAAAGTATGTCCATAGATCATGTCTGGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCGTGTTACGTGCAAATGTCCCTCCTGATCGCTGGTGGTTGAGACTGAAATTTCAGTTTCTCGTTGCTAGGGACCATGCGTTCATTTTCATCATTGTTCAGCTGATTGTGGCATTCTTGGGGGTGTTGGTGTACAAATTCTACGGGGAGGAACTAAGGGAAATGTTTGGTTACGAAGAACACCCATATGGGTTCTATGCCATGGCTGTATTGGCTATCATCTTGGTTGGTTTACTCTATGGTTTCTTCATAGCGATTATATGCGGGCAGAGGATAAATGAACGTCACTACCATGTCCTTGCTAAGCAAGAACTGACAAAGGTCCAGTAA | 618 | 44.17 | MQLSVESSSSAEIIAIGRESSVSDDDVHNLNVDETCRLVNADQPQCRICLDTGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKVQ | 205 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 88039933 | 88044743 | - | Tan0011622.3 | Tan04g2888 | 751292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan04g2888 | 205 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 164 | 203 | - | - | |
| Tan04g2888 | 205 | Pfam | RING-variant domain | 46 | 93 | IPR011016 | GO:0008270(InterPro) | |
| Tan04g2888 | 205 | SUPERFAMILY | RING/U-box | 41 | 97 | - | - | |
| Tan04g2888 | 205 | SMART | ringv_2 | 45 | 94 | IPR011016 | GO:0008270(InterPro) | |
| Tan04g2888 | 205 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 38 | 100 | IPR011016 | GO:0008270(InterPro) | |
| Tan04g2888 | 205 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 39 | 98 | IPR013083 | - | |
| Tan04g2888 | 205 | CDD | RING_CH-C4HC3_MARCH | 46 | 94 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan04g2886 | Tan-Chr4:88039933 | Tan04g2888 | Tan-Chr4:88039933 | 7.90E-115 | dispersed | |
| Tan04g2888 | Tan-Chr4:88039933 | Tan09g1394 | Tan-Chr9:66071587 | 5.40E-27 | dispersed | |
| Tan04g2887 | Tan-Chr4:88039933 | Tan04g2888 | Tan-Chr4:88039933 | 1.50E-93 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan04g2888 | - | - | - | 0.0 |