Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan04g2901 ATGCCAATGGGCGTGCGCGTGGCGGGGCTTATGCGCGCACCAGCCCCAACCATCAGCGCCGCTTTCCTCTCTCTCTCCCTCTTTCTCTCCCCATGCATAATGGTGGTCTTGTCGGCTTCTGACGCCGAAACTCTCCTTCAATTCAAGCGCTCTTTGACCTCCACCGCCGCTCTTCACAATTGGAATCCCTCCGTTCCTCCTTGCGACAACAACAAGGCCAATTGGGCGGGTGTGCTTTGTTTGAATGGCTATGTTAGGGGTCTGCGGCTTGAAAATATGGGACTTAAGGGCGTGGTTGATGTGAATCCCCTCGTTTCTTTGATTCATTTGCGCACCCTCAGCTTCATGAACAACACCTTGGTTGGCCCTTGGCCTCCTATTATAAGCAAACTAGGCAATCTACGGTCCGTTTATCTCTCCTATAACCATTTTTCAGGAGAAATCCCAGACGATGCCTTTACGGGTATGAAATTTTTGAAGAAAGTGTTTTTGACCAATAATGAATTCAACGGCCAAATTCCCTCATCTCTCGCTTCACTGTCTAGGCTTATGGAGTTGAGACTTGATGGAAACAAATTCAAAGGCCAAGTCCCCCACCTTGAAATGGATACTTTGAAGAAACTTAATGTTTCCAACAATGACTTGGAGGGTCCCATACCTAGTAGCTTAAGCCATATGGATCCTACCTGTTTTTCAGGTAACAGTGATCTGTGTGGGGATCCTCTTCCAGTATGCGAGAAATCCAAGTTGTCATCCTCGGGGCTGCTGAAAATCGCGGTGATAGTGATAGTTCTGGGGGTAATATTAGCAGTGATAGCTGCAATTTTTATCATATTGAATTTAAGGAAGCAGCCAGCGTTGCAACTGGGGAAGGGGAAGGGGAATGCAGGAGGCATTATTGAAGAGGAGAACAAGTACATGAGTAAGCAAACGACAGCAGGGGATGCATATAGATCCACGGAGTCGTCGGGGGCACAGGCTTCGAAGAGGGGAGCAGAACATGGCAAACTATTGTTCGTGAGGGATGACAGGGAGAGGTTTGACTTACAGGACCTGCTCAGAGCGTCCGCCGAAATATTGGGGAGTGGTTCATTCGGGTCTTCCTACAAAGCAACCATACTTTGTAATGCGGTGGTGGTGAAGCGATACAAGCATATGAACAACGTAGGAAGAGAGGAGTTTCATGAGTACATGAGAAGGCTTGGCAGGTTGACGCATCCAAATCTACTGCCGCTGGTTGCTTATTATTACAGGAAGGAAGAGAAGCTTTTGATTTCCGACTTTGTGGATAACGGGAGTTTGGCAAGCCATCTGCATGGGAACCACAACGTGGAGGAGCCAGGGCTGGATTGGGCCACCAGGTTGAAGATCATCAGAGGCATAGCAAGAGGGCTGTCTTACCTCTACACCTCCCTACCCAACATAGTAACACCCCACGGCCATCTCAAATCTTCAAATGTGCTGTTAGACGACTCCTTGGACCCTCTGCTCACGGATTACGGCCTACTCCCAGTTGCCAATCTAGAGCACGGCCAGACACTGATGATGGCCTATAAATCACCCGAGTATGCCCACCTGGGCCGCATAACCAAGAAGACCGACGTCTGGAGCTTCGGAATTGTGATACTGGAGATGTTGACGGGTAGGTTTCCAGAGAACTACCTCACCCGAAATCATGACACCAAAGCAGACCTCGCCACTTGGGTCAACAACATGATCAAGGAAAAGAAGACGGCACAAGTCTTCGATGCAGAGCTGGGGAAAGCCAGGGAGAGCAACAAAGGCGAGTTGTTGAAGATGCTTAAGATTGGCTTGAGTTGCTGTGAGGAAGATTTGGATAGAAGGTTGGGCCTGAATGAGATAGTAACCCAAATTGAAGACTTGAACGAGGCAGACTTGAGTGATGATGGAGATAACTTCTCCCCCACTCAAATTCCTGTTTGA 1944 48.71 MPMGVRVAGLMRAPAPTISAAFLSLSLFLSPCIMVVLSASDAETLLQFKRSLTSTAALHNWNPSVPPCDNNKANWAGVLCLNGYVRGLRLENMGLKGVVDVNPLVSLIHLRTLSFMNNTLVGPWPPIISKLGNLRSVYLSYNHFSGEIPDDAFTGMKFLKKVFLTNNEFNGQIPSSLASLSRLMELRLDGNKFKGQVPHLEMDTLKKLNVSNNDLEGPIPSSLSHMDPTCFSGNSDLCGDPLPVCEKSKLSSSGLLKIAVIVIVLGVILAVIAAIFIILNLRKQPALQLGKGKGNAGGIIEEENKYMSKQTTAGDAYRSTESSGAQASKRGAEHGKLLFVRDDRERFDLQDLLRASAEILGSGSFGSSYKATILCNAVVVKRYKHMNNVGREEFHEYMRRLGRLTHPNLLPLVAYYYRKEEKLLISDFVDNGSLASHLHGNHNVEEPGLDWATRLKIIRGIARGLSYLYTSLPNIVTPHGHLKSSNVLLDDSLDPLLTDYGLLPVANLEHGQTLMMAYKSPEYAHLGRITKKTDVWSFGIVILEMLTGRFPENYLTRNHDTKADLATWVNNMIKEKKTAQVFDAELGKARESNKGELLKMLKIGLSCCEEDLDRRLGLNEIVTQIEDLNEADLSDDGDNFSPTQIPV 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 88302151 88304414 + Tan0003526.1 Tan04g2901 751305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan04g2901 647 Gene3D Ribonuclease Inhibitor 38 200 IPR032675 -
Tan04g2901 647 SUPERFAMILY L domain-like 39 226 - -
Tan04g2901 647 Pfam Leucine rich repeat 133 193 IPR001611 GO:0005515(InterPro)
Tan04g2901 647 Gene3D Ribonuclease Inhibitor 201 249 IPR032675 -
Tan04g2901 647 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 101 197 - -
Tan04g2901 647 Pfam Leucine rich repeat N-terminal domain 39 80 IPR013210 -
Tan04g2901 647 FunFam Pollen receptor-like kinase 1 429 639 - -
Tan04g2901 647 Gene3D Transferase(Phosphotransferase) domain 1 429 641 - -
Tan04g2901 647 ProSiteProfiles Protein kinase domain profile. 354 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan04g2901 647 Gene3D Phosphorylase Kinase; domain 1 319 428 - -
Tan04g2901 647 FunFam pollen receptor-like kinase 1 323 428 - -
Tan04g2901 647 Pfam Protein tyrosine and serine/threonine kinase 358 624 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan04g2901 647 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 36 629 IPR046959 -
Tan04g2901 647 SUPERFAMILY Protein kinase-like (PK-like) 358 626 IPR011009 -
Tan04g2901 647 Pfam Leucine Rich Repeat 205 226 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2901 Tan-Chr4:88302151 Tan09g1789 Tan-Chr9:69389262 1.50E-139 dispersed
Tan04g2901 Tan-Chr4:88302151 Tan02g2602 Tan-Chr2:94651665 5.50E-142 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67531 PF07714 PK_Tyr_Ser-Thr 2.10E-28 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan04g2901 K28077 - csv:101203276 989.564