Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0044 ATGGCGGTTCAAGAATCTCCATTGAAGCTCTACTCCTACTGGATCAGTACTTGTGCTCAACGTGTTCGAATAGCCCTTAACTTAAAAGGGCTAAACTTTGAGTACAAAGCTGTTGACCTTATTAAGGGAGAGCATTTGAGTCCCGACTATCTAAAGCTCAATCCAGTTGGTTTTGTACCAACCCTTGTGGATGGGGATATTGTTATTGCAGACTCTTTTGCCATAATAATGTATTTGGAGGAAAAGTATCCTCAGCATCCTCTGTTGCCTAGTGATCTTCATAAAAGGGCTATTAATTACCAGGCTGCAAATATTGTTTCTTCAAGCATACAGCCTCTTCAAAATTTAATTGTTGAGAATTACGTTGAGGAAAAATGTGGTCCAGAGGAGAAACTTTCTTGGGTTCATATGATCATTGGAAAAGGTTTTTTAGCACTCGAGAAGTTGCTAAAAGTTCATTCTGGAAAATTTGCTACTGGAGACGAAATTTATCTGGTATTGGGAGATTTGAATCAGAAATTCGACATGTCAGCGGATTTGTTTTTGGCACCTCAACTCTACCGCGCCATTGAAACATTCAATGTTGACATGTCCAAGTTTCCAATTTTATCAAGATTGTATGAGGAATACAAAGAAGTACCAGCATTTCAAGATGCAGCACCAGAGAAGCAGCCTGATGCTCCTTCTCAAAGCTCTAGCTAA 702 39.46 MAVQESPLKLYSYWISTCAQRVRIALNLKGLNFEYKAVDLIKGEHLSPDYLKLNPVGFVPTLVDGDIVIADSFAIIMYLEEKYPQHPLLPSDLHKRAINYQAANIVSSSIQPLQNLIVENYVEEKCGPEEKLSWVHMIIGKGFLALEKLLKVHSGKFATGDEIYLVLGDLNQKFDMSADLFLAPQLYRAIETFNVDMSKFPILSRLYEEYKEVPAFQDAAPEKQPDAPSQSSS 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 551853 556589 + Tan0021933.1 Tan05g0044 751352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0044 233 NCBIfam maleylacetoacetate isomerase 9 227 IPR005955 GO:0003824(InterPro)|GO:0005737(InterPro)|GO:0009072(InterPro)
Tan05g0044 233 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 229 IPR010987 -
Tan05g0044 233 PANTHER MALEYLACETOACETATE ISOMERASE 7 227 - GO:0004364(PANTHER)|GO:0006559(PANTHER)|GO:0006749(PANTHER)|GO:0016034(PANTHER)
Tan05g0044 233 FunFam Glutathione S-transferase Z1 6 90 - -
Tan05g0044 233 CDD GST_C_Zeta 93 224 IPR034330 -
Tan05g0044 233 SFLD Main (cytGST) 8 210 - -
Tan05g0044 233 SUPERFAMILY GST C-terminal domain-like 87 228 IPR036282 -
Tan05g0044 233 Gene3D - 91 230 - -
Tan05g0044 233 SUPERFAMILY Thioredoxin-like 5 90 IPR036249 -
Tan05g0044 233 Gene3D Glutaredoxin 6 90 - -
Tan05g0044 233 FunFam Maleylacetoacetate isomerase 91 230 - -
Tan05g0044 233 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 6 87 IPR004045 -
Tan05g0044 233 CDD GST_N_Zeta 8 80 IPR034333 -
Tan05g0044 233 Pfam Glutathione S-transferase, N-terminal domain 10 86 IPR004045 -
Tan05g0044 233 SFLD Glutathione Transferase (cytosolic) 8 210 IPR040079 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0044 Tan-Chr5:551853 Tan05g0046 Tan-Chr5:551853 6.50E-93 dispersed
Tan05g0044 Tan-Chr5:551853 Tan05g0045 Tan-Chr5:551853 1.90E-121 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0044 K01800 - csv:116401624 375.941