Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g0055 | ATGGCGGCTCGAGCTGTTGTTCCTCAGCCACAGCTACGAATCAGAGGTGAAGGCAAGCCAAAGATGGTAGCGGCTGAAGGAAGAACTAGGCGAGTTCTTCAAGATATAGGCAATCTGGTGCCTGATCGAGCCGTGGAAGGGAAACCCGGACCTCAACCTGCCGAGAAGAACAAGAGAGCAATCACGCAAAAGCTCGACGGGGGAGTCGGAAAGGGAGGCGATGTGACGAAGGCTGCAGTAACTGAGAAACCTAAGACTGTACTGAGCTCCGCCGACAAGAGACATATAATCAACATCAGCGATAGTAAATCAAGGGATAAGAATAAGAAAACTCTGACTTCAACCCTTAGTGCCAGAAGCAAGGCTGCATGTGGACTCACCAATAATCCAGTAACTAATATTGATGAAGCAGATGCTAACAACGAACTGGCAGTAGTTGAATACATCGATGACATGTATAAGTTTTACAAGCTTGCAGAAGATGAAAGCAGAGTGTCAGATTACATGGGATCACAGCCAGATTTGAATGCCAAGATGAGATCCATCCTCATAGATTGGTTGATTGAAGTTCATCGCAAGTTTGAACTGATGCCAGAAACCCTTTACCTCACTGTCAACATTGTAGACCGATTCCTTTCCTTGAAGACTGTACCAAGGAGGGAACTTCAATTAGTAGGTATCAGCTCTATGCTGATAGCATGCAAATATGAAGAGATTTGGGCTCCAGAGGTCAATGATTTTGTGAGTATATCTGCAAATACTTATCAGAGAGAACAAATTTTGGTGATGGAGAAAGTGATCTTGGGCAGGCTGGAATGGCTTCTTACAGTTCCTACACCTTATGTTTTTCTTGTTCGATATGCCAAGGCTTCTGAGCCGTCGGATGAGGAGATGGAGAACATGGTCTTTTTTCTGGCTGAGCTTGGTCTGATAAACTATCCCATAGCGATATCATACAGCCCTTCAATGATTGCTTCAGCAGCTGTTTATGCTGCACGATGCACACTGGATAAAACCCCAATCTGGACATCAACTTTGCAGCACCATACAGGCTATGTTGAAGATGAGTTGAAGGAATGTGCAGAACTCCTTGTGAACTTGCACCGTGGAGCTGTAGATTGCAAGCTCAAGGCTGTGTATAGAAAATATACGAGTCCAGATCGCAGTGCAGTTGCTCTTTTTCCTCCAGCTAAAAGTCTTAACTCCAGATCGTAG | 1215 | 44.94 | MAARAVVPQPQLRIRGEGKPKMVAAEGRTRRVLQDIGNLVPDRAVEGKPGPQPAEKNKRAITQKLDGGVGKGGDVTKAAVTEKPKTVLSSADKRHIINISDSKSRDKNKKTLTSTLSARSKAACGLTNNPVTNIDEADANNELAVVEYIDDMYKFYKLAEDESRVSDYMGSQPDLNAKMRSILIDWLIEVHRKFELMPETLYLTVNIVDRFLSLKTVPRRELQLVGISSMLIACKYEEIWAPEVNDFVSISANTYQREQILVMEKVILGRLEWLLTVPTPYVFLVRYAKASEPSDEEMENMVFFLAELGLINYPIAISYSPSMIASAAVYAARCTLDKTPIWTSTLQHHTGYVEDELKECAELLVNLHRGAVDCKLKAVYRKYTSPDRSAVALFPPAKSLNSRS | 404 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 582263 | 584440 | - | Tan0002238.1 | Tan05g0055 | 751363 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g0055 | 404 | ProSitePatterns | Cyclins signature. | 180 | 211 | IPR048258 | - | |
Tan05g0055 | 404 | Gene3D | - | 151 | 392 | - | - | |
Tan05g0055 | 404 | SUPERFAMILY | Cyclin-like | 279 | 400 | IPR036915 | - | |
Tan05g0055 | 404 | PANTHER | CYCLINS | 132 | 384 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Tan05g0055 | 404 | Pfam | Cyclin, N-terminal domain | 151 | 275 | IPR006671 | - | |
Tan05g0055 | 404 | SMART | Cyclin_C_2 | 278 | 397 | IPR004367 | - | |
Tan05g0055 | 404 | PIRSF | Cyclin_A_B_D_E | 69 | 404 | IPR046965 | GO:0016538(InterPro)|GO:0044772(InterPro) | |
Tan05g0055 | 404 | PIRSF | Cyclin_A_B_D_E | 2 | 94 | IPR046965 | GO:0016538(InterPro)|GO:0044772(InterPro) | |
Tan05g0055 | 404 | SMART | cyclin_7 | 185 | 269 | IPR013763 | - | |
Tan05g0055 | 404 | SMART | cyclin_7 | 282 | 366 | IPR013763 | - | |
Tan05g0055 | 404 | Gene3D | - | 165 | 276 | - | - | |
Tan05g0055 | 404 | SUPERFAMILY | Cyclin-like | 140 | 273 | IPR036915 | - | |
Tan05g0055 | 404 | FunFam | G2/mitotic-specific cyclin | 164 | 272 | - | - | |
Tan05g0055 | 404 | Pfam | Cyclin, C-terminal domain | 278 | 396 | IPR004367 | - | |
Tan05g0055 | 404 | CDD | CYCLIN_AtCycB-like_rpt1 | 130 | 273 | - | - | |
Tan05g0055 | 404 | FunFam | G2/mitotic-specific cyclin-1 | 273 | 392 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan02g0023 | Tan-Chr2:602421 | Tan05g0055 | Tan-Chr5:582263 | 2.70E-53 | dispersed | |
Tan03g0520 | Tan-Chr3:59500438 | Tan05g0055 | Tan-Chr5:582263 | 7.40E-109 | dispersed | |
Tan03g0521 | Tan-Chr3:59516029 | Tan05g0055 | Tan-Chr5:582263 | 3.30E-109 | dispersed | |
Tan03g2169 | Tan-Chr3:76288302 | Tan05g0055 | Tan-Chr5:582263 | 1.20E-66 | dispersed | |
Tan05g0055 | Tan-Chr5:582263 | Tan11g1250 | Tan-Chr11:10640351 | 1.10E-47 | dispersed | |
Tan05g0055 | Tan-Chr5:582263 | Tan01g3680 | Tan-Chr1:101634757 | 5.50E-47 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g0055 | K21777 | - | csv:101222873 | 684.485 |