Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0055 ATGGCGGCTCGAGCTGTTGTTCCTCAGCCACAGCTACGAATCAGAGGTGAAGGCAAGCCAAAGATGGTAGCGGCTGAAGGAAGAACTAGGCGAGTTCTTCAAGATATAGGCAATCTGGTGCCTGATCGAGCCGTGGAAGGGAAACCCGGACCTCAACCTGCCGAGAAGAACAAGAGAGCAATCACGCAAAAGCTCGACGGGGGAGTCGGAAAGGGAGGCGATGTGACGAAGGCTGCAGTAACTGAGAAACCTAAGACTGTACTGAGCTCCGCCGACAAGAGACATATAATCAACATCAGCGATAGTAAATCAAGGGATAAGAATAAGAAAACTCTGACTTCAACCCTTAGTGCCAGAAGCAAGGCTGCATGTGGACTCACCAATAATCCAGTAACTAATATTGATGAAGCAGATGCTAACAACGAACTGGCAGTAGTTGAATACATCGATGACATGTATAAGTTTTACAAGCTTGCAGAAGATGAAAGCAGAGTGTCAGATTACATGGGATCACAGCCAGATTTGAATGCCAAGATGAGATCCATCCTCATAGATTGGTTGATTGAAGTTCATCGCAAGTTTGAACTGATGCCAGAAACCCTTTACCTCACTGTCAACATTGTAGACCGATTCCTTTCCTTGAAGACTGTACCAAGGAGGGAACTTCAATTAGTAGGTATCAGCTCTATGCTGATAGCATGCAAATATGAAGAGATTTGGGCTCCAGAGGTCAATGATTTTGTGAGTATATCTGCAAATACTTATCAGAGAGAACAAATTTTGGTGATGGAGAAAGTGATCTTGGGCAGGCTGGAATGGCTTCTTACAGTTCCTACACCTTATGTTTTTCTTGTTCGATATGCCAAGGCTTCTGAGCCGTCGGATGAGGAGATGGAGAACATGGTCTTTTTTCTGGCTGAGCTTGGTCTGATAAACTATCCCATAGCGATATCATACAGCCCTTCAATGATTGCTTCAGCAGCTGTTTATGCTGCACGATGCACACTGGATAAAACCCCAATCTGGACATCAACTTTGCAGCACCATACAGGCTATGTTGAAGATGAGTTGAAGGAATGTGCAGAACTCCTTGTGAACTTGCACCGTGGAGCTGTAGATTGCAAGCTCAAGGCTGTGTATAGAAAATATACGAGTCCAGATCGCAGTGCAGTTGCTCTTTTTCCTCCAGCTAAAAGTCTTAACTCCAGATCGTAG 1215 44.94 MAARAVVPQPQLRIRGEGKPKMVAAEGRTRRVLQDIGNLVPDRAVEGKPGPQPAEKNKRAITQKLDGGVGKGGDVTKAAVTEKPKTVLSSADKRHIINISDSKSRDKNKKTLTSTLSARSKAACGLTNNPVTNIDEADANNELAVVEYIDDMYKFYKLAEDESRVSDYMGSQPDLNAKMRSILIDWLIEVHRKFELMPETLYLTVNIVDRFLSLKTVPRRELQLVGISSMLIACKYEEIWAPEVNDFVSISANTYQREQILVMEKVILGRLEWLLTVPTPYVFLVRYAKASEPSDEEMENMVFFLAELGLINYPIAISYSPSMIASAAVYAARCTLDKTPIWTSTLQHHTGYVEDELKECAELLVNLHRGAVDCKLKAVYRKYTSPDRSAVALFPPAKSLNSRS 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 582263 584440 - Tan0002238.1 Tan05g0055 751363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0055 404 ProSitePatterns Cyclins signature. 180 211 IPR048258 -
Tan05g0055 404 Gene3D - 151 392 - -
Tan05g0055 404 SUPERFAMILY Cyclin-like 279 400 IPR036915 -
Tan05g0055 404 PANTHER CYCLINS 132 384 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Tan05g0055 404 Pfam Cyclin, N-terminal domain 151 275 IPR006671 -
Tan05g0055 404 SMART Cyclin_C_2 278 397 IPR004367 -
Tan05g0055 404 PIRSF Cyclin_A_B_D_E 69 404 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Tan05g0055 404 PIRSF Cyclin_A_B_D_E 2 94 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Tan05g0055 404 SMART cyclin_7 185 269 IPR013763 -
Tan05g0055 404 SMART cyclin_7 282 366 IPR013763 -
Tan05g0055 404 Gene3D - 165 276 - -
Tan05g0055 404 SUPERFAMILY Cyclin-like 140 273 IPR036915 -
Tan05g0055 404 FunFam G2/mitotic-specific cyclin 164 272 - -
Tan05g0055 404 Pfam Cyclin, C-terminal domain 278 396 IPR004367 -
Tan05g0055 404 CDD CYCLIN_AtCycB-like_rpt1 130 273 - -
Tan05g0055 404 FunFam G2/mitotic-specific cyclin-1 273 392 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0023 Tan-Chr2:602421 Tan05g0055 Tan-Chr5:582263 2.70E-53 dispersed
Tan03g0520 Tan-Chr3:59500438 Tan05g0055 Tan-Chr5:582263 7.40E-109 dispersed
Tan03g0521 Tan-Chr3:59516029 Tan05g0055 Tan-Chr5:582263 3.30E-109 dispersed
Tan03g2169 Tan-Chr3:76288302 Tan05g0055 Tan-Chr5:582263 1.20E-66 dispersed
Tan05g0055 Tan-Chr5:582263 Tan11g1250 Tan-Chr11:10640351 1.10E-47 dispersed
Tan05g0055 Tan-Chr5:582263 Tan01g3680 Tan-Chr1:101634757 5.50E-47 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0055 K21777 - csv:101222873 684.485