Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0066 ATGGCGGATATTAGAAAATGGTTCATGAAAGCGCACGATAAAGACAATGGCAGTGCGTCAAAGCATGCAAAACCCGCTCCAAGCAATACAGAGAAATCCGCTACAGCTGAACTGCAGTCCGGAAAAACAGAGCTGAGTGGTGGGGAAAGGACTGGCAGAAGGATAACTAGTAAGTATTTTGCCTCAGAAAAGCAGAAGTCTAAGGATACAAAAGAAACAGAGGAACTCCCTATCAAACGAAAGTCTCCACAGGATGCTAAGGAATCACCAGCCAAAAGAAAGTCTCAAAAGGATAGTGAGGAATCACTGAAAGCTCCACCTTTTAAAAAATTAAACAAAATTGATGACAATGACGATGATGCTGTTTTTTCAAGTTCTAGAAAGAACTTGTCTGATGTCACTCCCAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACGCAGAAACAGGTAGAAATTGAAGAGAGTGATGATGAGGAAGCGAAGGGCACCGAGTCTTCTCTAAAGCCTAGTGGAAGGGGTAGGGGGGGAAGAGGTTCATCTGCTGCAACCGTTGGTGGTAGAGGCAGAGGTGGTGGGCGGGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCGCACAAAGGAGAAAAGGAAGTCCCTGAAGGAGCTCCTGACTGTTTAGCCGGTTTAACTTTTGTAATTAGTGGAACCCTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCACGGTGGTCGAGTAACTGGATCTATCAGCAAAAAAACAAATTATCTACTATGCGATGAAGATATTGGTGGTCGAAAATCTTCCAAAGCGAAAGAGCTGGGAACTGCTTTTCTCACTGAGGATGGCTTATTTGACATGATTCGTGCATCAGGCACAAAGGCTCCTCCAAGGCAAGATCCTAAAAAGTCTGTGGTTAAGTCCGTGGAATCTCCAACAGAGAAAAATTCGCCGAAAGTACAAGCGAAGGCTCGCAAAGATTTGTCTGCTGGTGCTTCACCTGCTAAGCAAAAAAGCCGAACAGTTGAATTATCTTCCGTAACATGGACAGAAAAATATAAGCCAAAGGTTCCAAATGACATTATAGGGAATCAGTCACTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACGAGAACTTCCTTGATGGTGGAAGCAAAAAGAAGGGTAAAAAGCTCAATGATTCTGGTGCCAAAAAATCTGTCTTGTTATGTGGAGGTCCAGGCATAGGTAAAACTACATCGGCTAAGTTGGTCAGCCAGATGCTTGGTTATGAGGCTATAGAGGTAAATGCCAGTGACAATCGGGGTAAATCAGATGCAAAAATTCAAAAGGGAATCGGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCTTTGCATTTCAGAACGGATAAGCCAAAACATCCCAAAACTGTGTTGATTATGGATGAGGTGGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCGAGCATTAAAATCTCCAAAATTCCAATTATCTGCATCTGTAATGACCGCTACAGCCAGAAGCTGAAAAGCCTTGTGAACTATTGTCTGATTCTCAGTTTTAGAAAACCCACGAAACAACAGATGGCCAAAAGATTGAGTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTAAATGGGGATATGCGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTGTCAATGTCAGTTATTAAATATGATGATATTCGCCAACGACTTCTGAGCAGTATGAAAGATGAAGACATCTCACCATTCACTGCTGTTGATAAGCTGTTTGGTTTCAATTCTGGGAAGTTAAGGATGGATGAACGGATAGACCTCAGTATGAGTGATATTGATCTTGTCCCTCTTCTTATTCAGGAAAATTATATTAATTATAGGCCAAGTTCTGTTAGTAAGGATGACAATGGGATCAAACGGATGGATTTGATTGCCCGTGCAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAAATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGTTCTATTGCTTCTTGTGTAATCCCAGCTTCATTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAGTAGATTTAGTGCATGGCTGGGAAAAAATTCAACATTTGGAAAAAATATGAGGCTTTTGGAGGATTTGCATGTTCACATTCTTGCTTCTCGTGAGTCGTGTTCTGGGAGGGAACACCTACGAGTTGAGAACCTTACTCTATTCCTGAAGAGGTTGACTGAACCACTGCACACGCTGCCTAAGGATGAAGCTGTTAAAATGGTTGTAGAATTTATGAGTCTATATTCGATCAGTCAAGAGGATTTTGATACTGTTGTGGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGATGGCGTGGCCCCTGCTGTCAAAGCTGCTCTGACAAAGACATACAAAGAAGCAAGCAAGACACACATGGTGCGGGCTGCAGATCTTATTACACTTCCTGGAATGAAAAAGGCTCCTCCTAAGAAGCGAATTGCAGCAATACTAGAACCAGCCGAGGATACAATTGAGGGCACTGGTGGAGACACATTGGCAGAAAGTGACGATGAGAACTCTTTGGACAACGACGGCGCAGAAGACTCAACAAATGGTGAGAAGCTGAAACTGGAGCTTCAAAGCTTGAATAAGAAAGGAATGCAAGTGCAGTTGGATTTGAAGGGCGTGGAAAACTCAAGCGCCAAGAAATCCAGTGGCAGAGGAAGAGGAGGTAGTTCCCAGGCCACAGAGAAGAAAGGTGGGCGAGGTTCAGGATCTGCCACGAAGAGGAAAAGATGA 2919 43.06 MADIRKWFMKAHDKDNGSASKHAKPAPSNTEKSATAELQSGKTELSGGERTGRRITSKYFASEKQKSKDTKETEELPIKRKSPQDAKESPAKRKSQKDSEESLKAPPFKKLNKIDDNDDDAVFSSSRKNLSDVTPNKKLKSGSGKGITQKQVEIEESDDEEAKGTESSLKPSGRGRGGRGSSAATVGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSISKKTNYLLCDEDIGGRKSSKAKELGTAFLTEDGLFDMIRASGTKAPPRQDPKKSVVKSVESPTEKNSPKVQAKARKDLSAGASPAKQKSRTVELSSVTWTEKYKPKVPNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKSVLLCGGPGIGKTTSAKLVSQMLGYEAIEVNASDNRGKSDAKIQKGIGGSNANSIKELISNESLHFRTDKPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLILSFRKPTKQQMAKRLSQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLLSSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDIDLVPLLIQENYINYRPSSVSKDDNGIKRMDLIARAAESIADGDIINVQIRRHRQWQLSQSSSIASCVIPASLLHGQRETLEQGERNFSRFSAWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHLRVENLTLFLKRLTEPLHTLPKDEAVKMVVEFMSLYSISQEDFDTVVELSKFQGRKNPLDGVAPAVKAALTKTYKEASKTHMVRAADLITLPGMKKAPPKKRIAAILEPAEDTIEGTGGDTLAESDDENSLDNDGAEDSTNGEKLKLELQSLNKKGMQVQLDLKGVENSSAKKSSGRGRGGSSQATEKKGGRGSGSATKRKR 972
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 637796 652942 - Tan0012296.1 Tan05g0066 751374
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0066 972 MobiDBLite consensus disorder prediction 202 217 - -
Tan05g0066 972 MobiDBLite consensus disorder prediction 878 913 - -
Tan05g0066 972 SUPERFAMILY post-AAA+ oligomerization domain-like 614 759 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Tan05g0066 972 ProSiteProfiles BRCT domain profile. 218 296 IPR001357 -
Tan05g0066 972 Pfam ATPase family associated with various cellular activities (AAA) 410 522 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan05g0066 972 Gene3D - 615 725 - -
Tan05g0066 972 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 79 936 - GO:0003677(PANTHER)|GO:0005634(PANTHER)
Tan05g0066 972 MobiDBLite consensus disorder prediction 1 20 - -
Tan05g0066 972 MobiDBLite consensus disorder prediction 22 46 - -
Tan05g0066 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 603 IPR027417 -
Tan05g0066 972 FunFam Replication factor C subunit 1 194 297 - -
Tan05g0066 972 Gene3D BRCT domain 195 297 IPR036420 -
Tan05g0066 972 MobiDBLite consensus disorder prediction 928 972 - -
Tan05g0066 972 SMART AAA_5 406 544 IPR003593 GO:0016887(InterPro)
Tan05g0066 972 MobiDBLite consensus disorder prediction 47 125 - -
Tan05g0066 972 CDD HLD_clamp_RFC 543 601 IPR047854 -
Tan05g0066 972 FunFam Replication factor C subunit 1 354 542 - -
Tan05g0066 972 MobiDBLite consensus disorder prediction 298 350 - -
Tan05g0066 972 MobiDBLite consensus disorder prediction 928 961 - -
Tan05g0066 972 MobiDBLite consensus disorder prediction 126 150 - -
Tan05g0066 972 CDD BRCT_RFC1 218 296 - -
Tan05g0066 972 CDD AAA 403 506 - -
Tan05g0066 972 SMART BRCT_7 220 298 IPR001357 -
Tan05g0066 972 SUPERFAMILY BRCT domain 218 297 IPR036420 -
Tan05g0066 972 Gene3D - 354 542 IPR027417 -
Tan05g0066 972 FunFam Replication factor C subunit 1 615 724 - -
Tan05g0066 972 FunFam Replication factor C subunit 1 543 614 - -
Tan05g0066 972 PIRSF RFC1 1 947 IPR012178 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)
Tan05g0066 972 MobiDBLite consensus disorder prediction 1 220 - -
Tan05g0066 972 Pfam BRCA1 C Terminus (BRCT) domain 220 295 IPR001357 -
Tan05g0066 972 MobiDBLite consensus disorder prediction 151 167 - -
Tan05g0066 972 Gene3D - 543 613 - -
Tan05g0066 972 Pfam Replication factor RFC1 C terminal domain 683 845 IPR013725 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0066 Tan-Chr5:637796 Tan10g0546 Tan-Chr10:4375254 1.40E-19 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0066 K10754 - csv:101204361 1622.83