Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan05g0066 | ATGGCGGATATTAGAAAATGGTTCATGAAAGCGCACGATAAAGACAATGGCAGTGCGTCAAAGCATGCAAAACCCGCTCCAAGCAATACAGAGAAATCCGCTACAGCTGAACTGCAGTCCGGAAAAACAGAGCTGAGTGGTGGGGAAAGGACTGGCAGAAGGATAACTAGTAAGTATTTTGCCTCAGAAAAGCAGAAGTCTAAGGATACAAAAGAAACAGAGGAACTCCCTATCAAACGAAAGTCTCCACAGGATGCTAAGGAATCACCAGCCAAAAGAAAGTCTCAAAAGGATAGTGAGGAATCACTGAAAGCTCCACCTTTTAAAAAATTAAACAAAATTGATGACAATGACGATGATGCTGTTTTTTCAAGTTCTAGAAAGAACTTGTCTGATGTCACTCCCAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACGCAGAAACAGGTAGAAATTGAAGAGAGTGATGATGAGGAAGCGAAGGGCACCGAGTCTTCTCTAAAGCCTAGTGGAAGGGGTAGGGGGGGAAGAGGTTCATCTGCTGCAACCGTTGGTGGTAGAGGCAGAGGTGGTGGGCGGGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCGCACAAAGGAGAAAAGGAAGTCCCTGAAGGAGCTCCTGACTGTTTAGCCGGTTTAACTTTTGTAATTAGTGGAACCCTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCACGGTGGTCGAGTAACTGGATCTATCAGCAAAAAAACAAATTATCTACTATGCGATGAAGATATTGGTGGTCGAAAATCTTCCAAAGCGAAAGAGCTGGGAACTGCTTTTCTCACTGAGGATGGCTTATTTGACATGATTCGTGCATCAGGCACAAAGGCTCCTCCAAGGCAAGATCCTAAAAAGTCTGTGGTTAAGTCCGTGGAATCTCCAACAGAGAAAAATTCGCCGAAAGTACAAGCGAAGGCTCGCAAAGATTTGTCTGCTGGTGCTTCACCTGCTAAGCAAAAAAGCCGAACAGTTGAATTATCTTCCGTAACATGGACAGAAAAATATAAGCCAAAGGTTCCAAATGACATTATAGGGAATCAGTCACTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACGAGAACTTCCTTGATGGTGGAAGCAAAAAGAAGGGTAAAAAGCTCAATGATTCTGGTGCCAAAAAATCTGTCTTGTTATGTGGAGGTCCAGGCATAGGTAAAACTACATCGGCTAAGTTGGTCAGCCAGATGCTTGGTTATGAGGCTATAGAGGTAAATGCCAGTGACAATCGGGGTAAATCAGATGCAAAAATTCAAAAGGGAATCGGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCTTTGCATTTCAGAACGGATAAGCCAAAACATCCCAAAACTGTGTTGATTATGGATGAGGTGGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCGAGCATTAAAATCTCCAAAATTCCAATTATCTGCATCTGTAATGACCGCTACAGCCAGAAGCTGAAAAGCCTTGTGAACTATTGTCTGATTCTCAGTTTTAGAAAACCCACGAAACAACAGATGGCCAAAAGATTGAGTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTAAATGGGGATATGCGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTGTCAATGTCAGTTATTAAATATGATGATATTCGCCAACGACTTCTGAGCAGTATGAAAGATGAAGACATCTCACCATTCACTGCTGTTGATAAGCTGTTTGGTTTCAATTCTGGGAAGTTAAGGATGGATGAACGGATAGACCTCAGTATGAGTGATATTGATCTTGTCCCTCTTCTTATTCAGGAAAATTATATTAATTATAGGCCAAGTTCTGTTAGTAAGGATGACAATGGGATCAAACGGATGGATTTGATTGCCCGTGCAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAAATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGTTCTATTGCTTCTTGTGTAATCCCAGCTTCATTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAGTAGATTTAGTGCATGGCTGGGAAAAAATTCAACATTTGGAAAAAATATGAGGCTTTTGGAGGATTTGCATGTTCACATTCTTGCTTCTCGTGAGTCGTGTTCTGGGAGGGAACACCTACGAGTTGAGAACCTTACTCTATTCCTGAAGAGGTTGACTGAACCACTGCACACGCTGCCTAAGGATGAAGCTGTTAAAATGGTTGTAGAATTTATGAGTCTATATTCGATCAGTCAAGAGGATTTTGATACTGTTGTGGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGATGGCGTGGCCCCTGCTGTCAAAGCTGCTCTGACAAAGACATACAAAGAAGCAAGCAAGACACACATGGTGCGGGCTGCAGATCTTATTACACTTCCTGGAATGAAAAAGGCTCCTCCTAAGAAGCGAATTGCAGCAATACTAGAACCAGCCGAGGATACAATTGAGGGCACTGGTGGAGACACATTGGCAGAAAGTGACGATGAGAACTCTTTGGACAACGACGGCGCAGAAGACTCAACAAATGGTGAGAAGCTGAAACTGGAGCTTCAAAGCTTGAATAAGAAAGGAATGCAAGTGCAGTTGGATTTGAAGGGCGTGGAAAACTCAAGCGCCAAGAAATCCAGTGGCAGAGGAAGAGGAGGTAGTTCCCAGGCCACAGAGAAGAAAGGTGGGCGAGGTTCAGGATCTGCCACGAAGAGGAAAAGATGA | 2919 | 43.06 | MADIRKWFMKAHDKDNGSASKHAKPAPSNTEKSATAELQSGKTELSGGERTGRRITSKYFASEKQKSKDTKETEELPIKRKSPQDAKESPAKRKSQKDSEESLKAPPFKKLNKIDDNDDDAVFSSSRKNLSDVTPNKKLKSGSGKGITQKQVEIEESDDEEAKGTESSLKPSGRGRGGRGSSAATVGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSISKKTNYLLCDEDIGGRKSSKAKELGTAFLTEDGLFDMIRASGTKAPPRQDPKKSVVKSVESPTEKNSPKVQAKARKDLSAGASPAKQKSRTVELSSVTWTEKYKPKVPNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKSVLLCGGPGIGKTTSAKLVSQMLGYEAIEVNASDNRGKSDAKIQKGIGGSNANSIKELISNESLHFRTDKPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLILSFRKPTKQQMAKRLSQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLLSSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDIDLVPLLIQENYINYRPSSVSKDDNGIKRMDLIARAAESIADGDIINVQIRRHRQWQLSQSSSIASCVIPASLLHGQRETLEQGERNFSRFSAWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHLRVENLTLFLKRLTEPLHTLPKDEAVKMVVEFMSLYSISQEDFDTVVELSKFQGRKNPLDGVAPAVKAALTKTYKEASKTHMVRAADLITLPGMKKAPPKKRIAAILEPAEDTIEGTGGDTLAESDDENSLDNDGAEDSTNGEKLKLELQSLNKKGMQVQLDLKGVENSSAKKSSGRGRGGSSQATEKKGGRGSGSATKRKR | 972 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 637796 | 652942 | - | Tan0012296.1 | Tan05g0066 | 751374 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan05g0066 | 972 | MobiDBLite | consensus disorder prediction | 202 | 217 | - | - | |
| Tan05g0066 | 972 | MobiDBLite | consensus disorder prediction | 878 | 913 | - | - | |
| Tan05g0066 | 972 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 614 | 759 | IPR008921 | GO:0003677(InterPro)|GO:0006260(InterPro) | |
| Tan05g0066 | 972 | ProSiteProfiles | BRCT domain profile. | 218 | 296 | IPR001357 | - | |
| Tan05g0066 | 972 | Pfam | ATPase family associated with various cellular activities (AAA) | 410 | 522 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Tan05g0066 | 972 | Gene3D | - | 615 | 725 | - | - | |
| Tan05g0066 | 972 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 79 | 936 | - | GO:0003677(PANTHER)|GO:0005634(PANTHER) | |
| Tan05g0066 | 972 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Tan05g0066 | 972 | MobiDBLite | consensus disorder prediction | 22 | 46 | - | - | |
| Tan05g0066 | 972 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 354 | 603 | IPR027417 | - | |
| Tan05g0066 | 972 | FunFam | Replication factor C subunit 1 | 194 | 297 | - | - | |
| Tan05g0066 | 972 | Gene3D | BRCT domain | 195 | 297 | IPR036420 | - | |
| Tan05g0066 | 972 | MobiDBLite | consensus disorder prediction | 928 | 972 | - | - | |
| Tan05g0066 | 972 | SMART | AAA_5 | 406 | 544 | IPR003593 | GO:0016887(InterPro) | |
| Tan05g0066 | 972 | MobiDBLite | consensus disorder prediction | 47 | 125 | - | - | |
| Tan05g0066 | 972 | CDD | HLD_clamp_RFC | 543 | 601 | IPR047854 | - | |
| Tan05g0066 | 972 | FunFam | Replication factor C subunit 1 | 354 | 542 | - | - | |
| Tan05g0066 | 972 | MobiDBLite | consensus disorder prediction | 298 | 350 | - | - | |
| Tan05g0066 | 972 | MobiDBLite | consensus disorder prediction | 928 | 961 | - | - | |
| Tan05g0066 | 972 | MobiDBLite | consensus disorder prediction | 126 | 150 | - | - | |
| Tan05g0066 | 972 | CDD | BRCT_RFC1 | 218 | 296 | - | - | |
| Tan05g0066 | 972 | CDD | AAA | 403 | 506 | - | - | |
| Tan05g0066 | 972 | SMART | BRCT_7 | 220 | 298 | IPR001357 | - | |
| Tan05g0066 | 972 | SUPERFAMILY | BRCT domain | 218 | 297 | IPR036420 | - | |
| Tan05g0066 | 972 | Gene3D | - | 354 | 542 | IPR027417 | - | |
| Tan05g0066 | 972 | FunFam | Replication factor C subunit 1 | 615 | 724 | - | - | |
| Tan05g0066 | 972 | FunFam | Replication factor C subunit 1 | 543 | 614 | - | - | |
| Tan05g0066 | 972 | PIRSF | RFC1 | 1 | 947 | IPR012178 | GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro) | |
| Tan05g0066 | 972 | MobiDBLite | consensus disorder prediction | 1 | 220 | - | - | |
| Tan05g0066 | 972 | Pfam | BRCA1 C Terminus (BRCT) domain | 220 | 295 | IPR001357 | - | |
| Tan05g0066 | 972 | MobiDBLite | consensus disorder prediction | 151 | 167 | - | - | |
| Tan05g0066 | 972 | Gene3D | - | 543 | 613 | - | - | |
| Tan05g0066 | 972 | Pfam | Replication factor RFC1 C terminal domain | 683 | 845 | IPR013725 | GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan05g0066 | Tan-Chr5:637796 | Tan10g0546 | Tan-Chr10:4375254 | 1.40E-19 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan05g0066 | K10754 | - | csv:101204361 | 1622.83 |