Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0067 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACACTCGTGACTGTGAGATGTGGGCATTGTTCAAATCTGCTGTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCCAGATTCCCAACAGGGTCATAAACAGCAGCAGGTGAGCCCTGGGGACTCGAGCAAGGACAGGGGTTCTTCTTCTTCTAAATGCACTAAAATTGGCTCTATTGATTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCGGAGAAAAGACAGCGTGTTCCTTCTGCGTATAATAGATTCATCAAAGAGGAAATCCAGAGGATTAAGGCTAACAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCACATTCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAAAAAATTAA 513 44.44 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPPDSQQGHKQQQVSPGDSSKDRGSSSSKCTKIGSIDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQKN 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 664647 671287 + Tan0009686.1 Tan05g0067 751375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0067 170 SUPERFAMILY HMG-box 106 154 IPR036910 -
Tan05g0067 170 PANTHER PROTEIN YABBY 6-RELATED 6 169 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
Tan05g0067 170 Gene3D High mobility group box domain 97 156 IPR036910 -
Tan05g0067 170 MobiDBLite consensus disorder prediction 57 92 - -
Tan05g0067 170 Pfam YABBY protein 7 161 IPR006780 GO:0007275(InterPro)
Tan05g0067 170 CDD HMG-box_SF 115 151 - -
Tan05g0067 170 FunFam Axial regulator YABBY 106 170 - -
Tan05g0067 170 MobiDBLite consensus disorder prediction 57 117 - -
Tan05g0067 170 MobiDBLite consensus disorder prediction 93 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0975 Tan-Chr4:8848483 Tan05g0067 Tan-Chr5:664647 6.40E-32 dispersed
Tan05g0067 Tan-Chr5:664647 Tan08g0251 Tan-Chr8:2246320 6.10E-48 dispersed
Tan05g0067 Tan-Chr5:664647 Tan05g0068 Tan-Chr5:666831 7.80E-80 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27362 PF04690 YABBY 1.30E-73 CL0114 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0067 K25796 - csv:101222154 315.849