Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0067 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACACTCGTGACTGTGAGATGTGGGCATTGTTCAAATCTGCTGTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCCAGATTCCCAACAGGGTCATAAACAGCAGCAGGTGAGCCCTGGGGACTCGAGCAAGGACAGGGGTTCTTCTTCTTCTAAATGCACTAAAATTGGCTCTATTGATTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCGGAGAAAAGACAGCGTGTTCCTTCTGCGTATAATAGATTCATCAAAGAGGAAATCCAGAGGATTAAGGCTAACAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCACATTCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAAAAAATTAA 513 44.44 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPPDSQQGHKQQQVSPGDSSKDRGSSSSKCTKIGSIDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQKN 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 664647 671287 + Tan0009686.1 Tan05g0067 751375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0067 170 SUPERFAMILY HMG-box 106 154 IPR036910 -
Tan05g0067 170 PANTHER PROTEIN YABBY 6-RELATED 6 169 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
Tan05g0067 170 Gene3D High mobility group box domain 97 156 IPR036910 -
Tan05g0067 170 MobiDBLite consensus disorder prediction 57 92 - -
Tan05g0067 170 Pfam YABBY protein 7 161 IPR006780 GO:0007275(InterPro)
Tan05g0067 170 CDD HMG-box_SF 115 151 - -
Tan05g0067 170 FunFam Axial regulator YABBY 106 170 - -
Tan05g0067 170 MobiDBLite consensus disorder prediction 57 117 - -
Tan05g0067 170 MobiDBLite consensus disorder prediction 93 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0067 K25796 - - csv:101222154 315.849
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0975 Tan-Chr4:8848483 Tan05g0067 Tan-Chr5:664647 6.40E-32 dispersed
Tan05g0067 Tan-Chr5:664647 Tan08g0251 Tan-Chr8:2246320 6.10E-48 dispersed
Tan05g0067 Tan-Chr5:664647 Tan05g0068 Tan-Chr5:666831 7.80E-80 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0975 . 1 178 C2C2-YABBY Transcription Factor Family AT1G69180 53.3 4.7e-46 181.8
Tan07g1851 . 79 237 C2C2-YABBY Transcription Factor Family AT2G45190 59.5 9.8e-43 170.6
Tan01g2003 . 66 218 C2C2-YABBY Transcription Factor Family AT2G45190 54.9 4.5e-40 161.8
Tan05g0067 . 1 168 C2C2-YABBY Transcription Factor Family AT1G08465 69.0 1.7e-56 216.5
Tan05g0068 . 8 151 C2C2-YABBY Transcription Factor Family AT1G08465 68.0 4.7e-46 181.8
Tan07g1851 . 35 227 C2C2-YABBY Transcription Factor Family AT1G08465 53.1 4.4e-44 175.3
Tan09g1419 . 5 178 C2C2-YABBY Transcription Factor Family AT1G08465 56.2 1.1e-42 170.6
Tan01g2003 . 17 195 C2C2-YABBY Transcription Factor Family AT1G08465 51.6 4.6e-41 165.2
Tan07g1851 . 46 236 C2C2-YABBY Transcription Factor Family AT4G00180 56.6 1.6e-50 196.8
Tan01g2003 . 27 216 C2C2-YABBY Transcription Factor Family AT4G00180 52.1 6.3e-47 184.9
Tan04g1253 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 54.0 8.5e-41 164.9
Tan09g1419 . 7 174 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 5.9e-64 241.1
Tan08g0251 . 8 169 C2C2-YABBY Transcription Factor Family AT2G26580 74.1 1.4e-62 236.5
Tan05g0067 . 1 168 C2C2-YABBY Transcription Factor Family AT2G26580 62.5 3.3e-51 198.7
Tan07g1851 . 35 199 C2C2-YABBY Transcription Factor Family AT2G26580 54.1 1.5e-43 173.3
Tan05g0068 . 8 151 C2C2-YABBY Transcription Factor Family AT2G26580 63.2 6.3e-42 167.9
Tan01g2003 . 17 182 C2C2-YABBY Transcription Factor Family AT2G26580 51.2 6.5e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004363 1 4 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 1 2 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27362 PF04690 YABBY 1.30E-73 CL0114 Tan TF