Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0068 ATGTGTATTTTGTTTGGGCAGGTAAGTGTTCCATGCAACAGCATGTTCACACTCGTGACTGTGAGATGTGGGCATTGTTCAAATCTGCTGTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCCAGATTCCCAACAGGGTCATAAACAGCAGCAGGTGAGCCCTGGGGACTCGAGCAAGGACAGGGGTTCTTCTTCTTCTAAATGCACTAAAATTGGCTCTATTGATTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCGGAGAAAAGACAGCGTGTTCCTTCTGCGTATAATAGATTCATCAAAGAGGAAATCCAGAGGATTAAGGCTAACAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCACATTCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAAAAAATTAA 462 44.37 MCILFGQVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPPDSQQGHKQQQVSPGDSSKDRGSSSSKCTKIGSIDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQKN 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 666831 671287 + Tan0009686.2 Tan05g0068 751376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0068 153 CDD HMG-box_SF 98 134 - -
Tan05g0068 153 SUPERFAMILY HMG-box 89 137 IPR036910 -
Tan05g0068 153 Gene3D High mobility group box domain 80 139 IPR036910 -
Tan05g0068 153 MobiDBLite consensus disorder prediction 76 93 - -
Tan05g0068 153 Pfam YABBY protein 7 144 IPR006780 GO:0007275(InterPro)
Tan05g0068 153 MobiDBLite consensus disorder prediction 40 100 - -
Tan05g0068 153 FunFam Axial regulator YABBY 89 153 - -
Tan05g0068 153 PANTHER PROTEIN YABBY 6-RELATED 4 152 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
Tan05g0068 153 MobiDBLite consensus disorder prediction 40 75 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0068 Tan-Chr5:666831 Tan08g0251 Tan-Chr8:2246320 1.60E-39 dispersed
Tan05g0067 Tan-Chr5:664647 Tan05g0068 Tan-Chr5:666831 7.80E-80 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27363 PF04690 YABBY 2.90E-60 CL0114 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0068 K25796 - csv:101222154 265.003