Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0087 ATGTCGGGTTCTCGAGCTCCCAACTCCTCTGGACACCCGTCTGAGCAGATCATGCACTCTCTTAAGCGCCAGCTCCCCTTCTCTTCTATGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTTGCCCCGGACCCTCGACTCGCCGATCAAGAAGCTGACGCTGTCGTAGTCAAATCTCCGCAATTGAAGCGGAAGAGTGAGGCAGCAGATTATGAAGCTGAGTCAACCGATAGAGCAGCTGGTCCTAGATTTACTGAGGTGGTTAACAGTCCCCATCAAACACCTGTATCTGTGAAAGGAGGAAAGGGAAACAAATCAAGGCTAACCAAATGCAGTAGATCGGGGCCACAGACTCCAATGTCAAATGTTGGTTCACCTTCTGCAAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTTATTAATCTGATCAAACAAGCGGAAGATGGTATTCTCGATCTAAATAAAGCAGCTGACACGTTAGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTTGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGGCCAGGGGATGCCGATGACAATTATGCCGGTCTACAGGAAGAAGTAGAGAACCTTTCCATGGAGGAGCGTGGATTAGACGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTATTTGTAACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTCAGTCAGTTTGAAGAAAAGTTTGAGGAGATAAATGGTGTGGAAGTGCCCCCGAGCTTGCCGTCAAGTTCAGGGTTTAATGAAACACCTGCAACAACGCTAGCAACAGATGATACCAGGGGAAAGGAAATTGAAACGCGGGAGCAAGATGTTCATAGAATGTGCTCGGATCTAAATGCTTCGCAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCGGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGTATCACTGACATGTGGAGAAGTGAACCTGGCGTTGAATGGAATGAACTGGGTACATTTCATGAAGATTACAGTATTGCCAATGTCAGCACACCCCAAACCCAGAATCCACTTTCCAATAATGCACCTGATATGCCTTCTGCTAATCCTTCTAGCAGCTAA 1389 45.79 MSGSRAPNSSGHPSEQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDPRLADQEADAVVVKSPQLKRKSEAADYEAESTDRAAGPRFTEVVNSPHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPSANNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGDADDNYAGLQEEVENLSMEERGLDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVPPSLPSSSGFNETPATTLATDDTRGKEIETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRSEPGVEWNELGTFHEDYSIANVSTPQTQNPLSNNAPDMPSANPSSS 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 799927 808207 + Tan0000026.1 Tan05g0087 751395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0087 462 CDD E2F_DD 216 322 IPR032198 GO:0046983(InterPro)
Tan05g0087 462 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan05g0087 462 MobiDBLite consensus disorder prediction 334 361 - -
Tan05g0087 462 Pfam E2F transcription factor CC-MB domain 221 321 IPR032198 GO:0046983(InterPro)
Tan05g0087 462 Coils Coil 218 255 - -
Tan05g0087 462 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan05g0087 462 MobiDBLite consensus disorder prediction 1 134 - -
Tan05g0087 462 MobiDBLite consensus disorder prediction 336 355 - -
Tan05g0087 462 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
Tan05g0087 462 PANTHER TRANSCRIPTION FACTOR E2F 31 417 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Tan05g0087 462 SUPERFAMILY E2F-DP heterodimerization region 217 322 IPR037241 -
Tan05g0087 462 MobiDBLite consensus disorder prediction 437 462 - -
Tan05g0087 462 Gene3D - 134 207 IPR036388 -
Tan05g0087 462 MobiDBLite consensus disorder prediction 60 81 - -
Tan05g0087 462 MobiDBLite consensus disorder prediction 109 134 - -
Tan05g0087 462 MobiDBLite consensus disorder prediction 1 23 - -
Tan05g0087 462 FunFam E2F transcription factor 1 134 207 - -
Tan05g0087 462 Gene3D - 213 322 - -
Tan05g0087 462 Coils Coil 156 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1249 Tan-Chr3:68818810 Tan05g0087 Tan-Chr5:799927 7.80E-123 dispersed
Tan03g1250 Tan-Chr3:68818810 Tan05g0087 Tan-Chr5:799927 6.00E-138 dispersed
Tan05g0087 Tan-Chr5:799927 Tan09g2196 Tan-Chr9:71983529 4.70E-10 dispersed
Tan05g0087 Tan-Chr5:799927 Tan05g0088 Tan-Chr5:799927 3.10E-240 tandem
Tan02g2064 Tan-Chr2:90100912 Tan05g0087 Tan-Chr5:799927 2.20E-59 transposed
Tan03g1248 Tan-Chr3:68818810 Tan05g0087 Tan-Chr5:799927 6.10E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27365 PF16421 E2F_CC-MB 1.80E-35 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0087 K06620 - csv:101219318 858.596