Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0088 ATGTCGGGTTCTCGAGCTCCCAACTCCTCTGGACACCCGTCTGAGCAGATCATGCACTCTCTTAAGCGCCAGCTCCCCTTCTCTTCTATGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTTGCCCCGGACCCTCGACTCGCCGATCAAGAAGCTGACGCTGTCGTAGTCAAATCTCCGCAATTGAAGCGGAAGAGTGAGGCAGCAGATTATGAAGCTGAGTCAACCGATAGAGCAGCTGGTCCTAGATTTACTGAGGTGGTTAACAGTCCCCATCAAACACCTGTATCTGTGAAAGGAGGAAAGGGAAACAAATCAAGGCTAACCAAATGCAGTAGATCGGGGCCACAGACTCCAATGTCAAATGTTGGTTCACCTTCTGCAAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTTATTAATCTGATCAAACAAGCGGAAGATGGTATTCTCGATCTAAATAAAGCAGCTGACACGTTAGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTTGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGGCCAGGGGATGCCGATGACAATTATGCCGGTCTACAGGAAGAAGTAGAGAACCTTTCCATGGAGGAGCGTGGATTAGACGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTATTTGTAACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTCAGTCAGTTTGAAGAAAAGTTTGAGGAGATAAATGGTGTGGAAGTGCCCCCGAGCTTGCCGTCAAGTTCAGGGTTTAATGAAACACCTGCAACAACGCTAGCAACAGATGATACCAGGGGAAAGGAAATTGAAACGCGGGAGCAAGATGTTCATAGAATGTGCTCGGATCTAAATGCTTCGCAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCGGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGTATCACTGACATGTGGAGAAGTGAACGTATCCTCTCAATTTAA 1272 45.83 MSGSRAPNSSGHPSEQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDPRLADQEADAVVVKSPQLKRKSEAADYEAESTDRAAGPRFTEVVNSPHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPSANNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGDADDNYAGLQEEVENLSMEERGLDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVPPSLPSSSGFNETPATTLATDDTRGKEIETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRSERILSI 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 799927 808207 + Tan0000026.2 Tan05g0088 751396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0088 423 CDD E2F_DD 216 322 IPR032198 GO:0046983(InterPro)
Tan05g0088 423 PANTHER TRANSCRIPTION FACTOR E2F 31 417 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Tan05g0088 423 MobiDBLite consensus disorder prediction 334 361 - -
Tan05g0088 423 SUPERFAMILY E2F-DP heterodimerization region 217 322 IPR037241 -
Tan05g0088 423 Coils Coil 218 255 - -
Tan05g0088 423 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan05g0088 423 MobiDBLite consensus disorder prediction 1 134 - -
Tan05g0088 423 MobiDBLite consensus disorder prediction 336 355 - -
Tan05g0088 423 Gene3D - 134 207 IPR036388 -
Tan05g0088 423 MobiDBLite consensus disorder prediction 60 81 - -
Tan05g0088 423 Pfam E2F transcription factor CC-MB domain 221 321 IPR032198 GO:0046983(InterPro)
Tan05g0088 423 MobiDBLite consensus disorder prediction 1 23 - -
Tan05g0088 423 MobiDBLite consensus disorder prediction 109 134 - -
Tan05g0088 423 Gene3D - 213 322 - -
Tan05g0088 423 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
Tan05g0088 423 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Tan05g0088 423 Coils Coil 156 176 - -
Tan05g0088 423 FunFam E2F transcription factor 1 134 207 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0088 K06620 - - csv:101219318 783.097
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g2064 Tan-Chr2:90100912 Tan05g0088 Tan-Chr5:799927 2.20E-59 dispersed
Tan05g0088 Tan-Chr5:799927 Tan09g2196 Tan-Chr9:71983529 4.30E-10 dispersed
Tan05g0087 Tan-Chr5:799927 Tan05g0088 Tan-Chr5:799927 3.10E-240 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan05g2044 . 3 375 E2F-DP Transcription Factor Family AT3G48160 56.0 6.8e-106 381.7
Tan05g2043 . 3 352 E2F-DP Transcription Factor Family AT3G48160 55.9 3.2e-95 346.3
Tan05g2045 . 3 352 E2F-DP Transcription Factor Family AT3G48160 55.9 3.2e-95 346.3
Tan01g0492 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.6 3.1e-60 229.6
Tan01g0493 . 81 282 E2F-DP Transcription Factor Family AT5G02470 55.6 9.1e-60 228.0
Tan01g0494 . 81 244 E2F-DP Transcription Factor Family AT5G02470 50.3 2.8e-40 163.3
Tan05g0087 . 21 441 E2F-DP Transcription Factor Family AT2G36010 56.2 1.4e-121 434.1
Tan03g1250 . 11 429 E2F-DP Transcription Factor Family AT2G36010 57.0 8.4e-119 424.9
Tan05g0088 . 21 418 E2F-DP Transcription Factor Family AT2G36010 56.8 1.8e-116 417.2
Tan03g1248 . 11 423 E2F-DP Transcription Factor Family AT2G36010 56.9 3.0e-116 416.4
Tan03g1249 . 5 354 E2F-DP Transcription Factor Family AT2G36010 61.5 6.3e-106 382.1
Tan05g0087 . 20 434 E2F-DP Transcription Factor Family AT5G22220 59.0 2.2e-116 416.8
Tan05g0088 . 20 418 E2F-DP Transcription Factor Family AT5G22220 60.0 7.8e-114 408.3
Tan03g1250 . 18 456 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-94 344.4
Tan03g1248 . 18 420 E2F-DP Transcription Factor Family AT5G22220 52.1 9.0e-94 341.7
Tan03g1249 . 25 381 E2F-DP Transcription Factor Family AT5G22220 54.2 1.4e-86 317.8
Tan02g2064 . 151 406 E2F-DP Transcription Factor Family AT1G47870 53.5 2.3e-66 250.4
Tan05g0087 . 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 1.6e-62 237.7
Tan05g0088 . 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 1.6e-62 237.7
Tan01g0492 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.6 3.1e-60 229.6
Tan01g0493 . 81 282 E2F-DP Transcription Factor Family AT5G02470 55.6 9.1e-60 228.0
Tan01g0494 . 81 244 E2F-DP Transcription Factor Family AT5G02470 50.3 2.8e-40 163.3
Tan05g0087 . 20 434 E2F-DP Transcription Factor Family AT5G22220 59.0 2.2e-116 416.8
Tan05g0088 . 20 418 E2F-DP Transcription Factor Family AT5G22220 60.0 7.8e-114 408.3
Tan03g1250 . 18 456 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-94 344.4
Tan03g1248 . 18 420 E2F-DP Transcription Factor Family AT5G22220 52.1 9.0e-94 341.7
Tan03g1249 . 25 381 E2F-DP Transcription Factor Family AT5G22220 54.2 1.4e-86 317.8
Tan05g0087 . 21 441 E2F-DP Transcription Factor Family AT2G36010 56.2 1.4e-121 434.1
Tan03g1250 . 11 429 E2F-DP Transcription Factor Family AT2G36010 57.0 8.4e-119 424.9
Tan05g0088 . 21 418 E2F-DP Transcription Factor Family AT2G36010 56.8 1.8e-116 417.2
Tan03g1248 . 11 423 E2F-DP Transcription Factor Family AT2G36010 56.9 3.0e-116 416.4
Tan03g1249 . 5 354 E2F-DP Transcription Factor Family AT2G36010 61.5 6.3e-106 382.1
Tan02g2064 . 151 406 E2F-DP Transcription Factor Family AT1G47870 53.5 2.3e-66 250.4
Tan05g0087 . 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 1.6e-62 237.7
Tan05g0088 . 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 1.6e-62 237.7
Tan05g2044 . 3 375 E2F-DP Transcription Factor Family AT3G48160 56.0 6.8e-106 381.7
Tan05g2043 . 3 352 E2F-DP Transcription Factor Family AT3G48160 55.9 3.2e-95 346.3
Tan05g2045 . 3 352 E2F-DP Transcription Factor Family AT3G48160 55.9 3.2e-95 346.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27366 PF16421 E2F_CC-MB 1.50E-35 No_clan Tan TF