Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g0088 | ATGTCGGGTTCTCGAGCTCCCAACTCCTCTGGACACCCGTCTGAGCAGATCATGCACTCTCTTAAGCGCCAGCTCCCCTTCTCTTCTATGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTTGCCCCGGACCCTCGACTCGCCGATCAAGAAGCTGACGCTGTCGTAGTCAAATCTCCGCAATTGAAGCGGAAGAGTGAGGCAGCAGATTATGAAGCTGAGTCAACCGATAGAGCAGCTGGTCCTAGATTTACTGAGGTGGTTAACAGTCCCCATCAAACACCTGTATCTGTGAAAGGAGGAAAGGGAAACAAATCAAGGCTAACCAAATGCAGTAGATCGGGGCCACAGACTCCAATGTCAAATGTTGGTTCACCTTCTGCAAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTTATTAATCTGATCAAACAAGCGGAAGATGGTATTCTCGATCTAAATAAAGCAGCTGACACGTTAGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTTGAAGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGGCCAGGGGATGCCGATGACAATTATGCCGGTCTACAGGAAGAAGTAGAGAACCTTTCCATGGAGGAGCGTGGATTAGACGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTATTTGTAACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTCAGTCAGTTTGAAGAAAAGTTTGAGGAGATAAATGGTGTGGAAGTGCCCCCGAGCTTGCCGTCAAGTTCAGGGTTTAATGAAACACCTGCAACAACGCTAGCAACAGATGATACCAGGGGAAAGGAAATTGAAACGCGGGAGCAAGATGTTCATAGAATGTGCTCGGATCTAAATGCTTCGCAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCGGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGTATCACTGACATGTGGAGAAGTGAACGTATCCTCTCAATTTAA | 1272 | 45.83 | MSGSRAPNSSGHPSEQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDPRLADQEADAVVVKSPQLKRKSEAADYEAESTDRAAGPRFTEVVNSPHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPSANNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGDADDNYAGLQEEVENLSMEERGLDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVPPSLPSSSGFNETPATTLATDDTRGKEIETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRSERILSI | 423 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 799927 | 808207 | + | Tan0000026.2 | Tan05g0088 | 751396 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g0088 | 423 | CDD | E2F_DD | 216 | 322 | IPR032198 | GO:0046983(InterPro) | |
Tan05g0088 | 423 | PANTHER | TRANSCRIPTION FACTOR E2F | 31 | 417 | IPR015633 | GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER) | |
Tan05g0088 | 423 | MobiDBLite | consensus disorder prediction | 334 | 361 | - | - | |
Tan05g0088 | 423 | SUPERFAMILY | E2F-DP heterodimerization region | 217 | 322 | IPR037241 | - | |
Tan05g0088 | 423 | Coils | Coil | 218 | 255 | - | - | |
Tan05g0088 | 423 | SMART | E2F_TDP_2 | 140 | 205 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Tan05g0088 | 423 | MobiDBLite | consensus disorder prediction | 1 | 134 | - | - | |
Tan05g0088 | 423 | MobiDBLite | consensus disorder prediction | 336 | 355 | - | - | |
Tan05g0088 | 423 | Gene3D | - | 134 | 207 | IPR036388 | - | |
Tan05g0088 | 423 | MobiDBLite | consensus disorder prediction | 60 | 81 | - | - | |
Tan05g0088 | 423 | Pfam | E2F transcription factor CC-MB domain | 221 | 321 | IPR032198 | GO:0046983(InterPro) | |
Tan05g0088 | 423 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Tan05g0088 | 423 | MobiDBLite | consensus disorder prediction | 109 | 134 | - | - | |
Tan05g0088 | 423 | Gene3D | - | 213 | 322 | - | - | |
Tan05g0088 | 423 | SUPERFAMILY | Winged helix DNA-binding domain | 140 | 203 | IPR036390 | - | |
Tan05g0088 | 423 | Pfam | E2F/DP family winged-helix DNA-binding domain | 142 | 205 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Tan05g0088 | 423 | Coils | Coil | 156 | 176 | - | - | |
Tan05g0088 | 423 | FunFam | E2F transcription factor 1 | 134 | 207 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan02g2064 | Tan-Chr2:90100912 | Tan05g0088 | Tan-Chr5:799927 | 2.20E-59 | dispersed | |
Tan05g0088 | Tan-Chr5:799927 | Tan09g2196 | Tan-Chr9:71983529 | 4.30E-10 | dispersed | |
Tan05g0087 | Tan-Chr5:799927 | Tan05g0088 | Tan-Chr5:799927 | 3.10E-240 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27366 | PF16421 | E2F_CC-MB | 1.50E-35 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g0088 | K06620 | - | csv:101219318 | 783.097 |