Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0113 ATGGCGGAAGAACATAGATGCCAAGCGCCGAAGCTCTGCGTCAACAACTGCGGATTCTTCGGGAGTCCGGCGACGCGAGATCTCTGTTCAAAGTGCTACCGAGATCTGCAGTTAAAGGAACAGCAATCCTCCTCCGCCAAACTCGCCCTAAACCAATCCCTAACATCCGCCGCCGCGTCATCCTCGTTCGCGGATGCGCCGTTGTTAAATCTCAAATCGGCTTTATCGGAAGCGAACCAGCCCGTGGAGGAGAAGGCGCTGTCAACGGAGGATGTGGCGGCGGCAGCGGCACAGGTGCAGCAGCAGCCGAGCCGATGCACGACGTGCAGGCGGCGCGTTGGATTGACGGGGTTCAAGTGCAGGTGCGGGATGGTGTACTGTGGGACTCACCGGTACCCGGAGCAACACGGATGTGAATTTGACTTCAAGGGGATGGGGAAGGATCAGATCGCAAAAGCGAATCCGGTGGTGAAAGGGGAGAAACTGCAGAAGATCTGA 498 57.63 MAEEHRCQAPKLCVNNCGFFGSPATRDLCSKCYRDLQLKEQQSSSAKLALNQSLTSAAASSSFADAPLLNLKSALSEANQPVEEKALSTEDVAAAAAQVQQQPSRCTTCRRRVGLTGFKCRCGMVYCGTHRYPEQHGCEFDFKGMGKDQIAKANPVVKGEKLQKI 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 937748 939271 + Tan0010575.1 Tan05g0113 751421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0113 165 Pfam AN1-like Zinc finger 106 142 IPR000058 GO:0008270(InterPro)
Tan05g0113 165 FunFam Zinc finger AN1-type containing 6 79 161 - -
Tan05g0113 165 SMART AN1_Zf_4 106 143 IPR000058 GO:0008270(InterPro)
Tan05g0113 165 SUPERFAMILY AN1-like Zinc finger 91 160 IPR035896 -
Tan05g0113 165 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Tan05g0113 165 Pfam A20-like zinc finger 12 34 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Tan05g0113 165 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 57 - -
Tan05g0113 165 PANTHER AN1-TYPE ZINC FINGER PROTEIN 8 165 IPR050652 -
Tan05g0113 165 SMART A20_3 10 34 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Tan05g0113 165 Gene3D - 78 161 IPR035896 -
Tan05g0113 165 Gene3D - 1 63 - -
Tan05g0113 165 ProSiteProfiles Zinc finger AN1-type profile. 100 146 IPR000058 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1202 Tan-Chr3:68328553 Tan05g0113 Tan-Chr5:937748 5.10E-42 dispersed
Tan05g0113 Tan-Chr5:937748 Tan06g0553 Tan-Chr6:4287309 6.30E-34 dispersed
Tan05g0113 Tan-Chr5:937748 Tan07g1749 Tan-Chr7:69067817 2.40E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0113 - - - 0.0