Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g0123 | ATGGCGAGCCATAGAGTTGAAGAAACTGGTCCTTCAAGCAATCATCTTCCATACAATCCACTTCTTTATGGAATCAACAACAACAATCCTTCCTCTACTCTGATCAATCACGATGGCCCATCTTTTGATTTTGGAGAATTGGAACAAGCAATTGTTTTACATGGGCACGGAGCTAAGAACAAACTCGATCCTCACGAACCCAAACAAAGCTTTTTCTCAGGCAGGCCTGCAGCAACTCTGGAAATGTTCCCTTCTTGGCCAATCAAATTCCAACAAACTCCAAGAGGAATTAGTTTGAGAGGAAGAGAAGAGAGCACAGATGAGTCAGGATCAGCTGTGAACACTCATACAATAAGCAAATCTGATCATCAATATCATCAACAACAACATAATCAATTGGAATTGGAATTGGAATTGGAACAAGAATCTTCAATGAGTAAAAAGGCATGTTCTTCTTCTTCTTCAGGTCATCAGGGCTTTATTCAGAAGCATCTGCAGCAGCAGATTCAACCTGAAATCATGCTCAGTGATGTTTCAACAACTGCACTATCACAACAACATCAGTCCCCTCAACCAAAGAGAAAAGGATGTGGTTCGATTTCAACATCACAGAAACAACTTGACGCTAAGACATTGAGACGTTTGGCTCAGAACAGAGAGGCTGCGAGGAAGAGTCGACTAAGAAAAAAGGCTTACGTACAGCAACTTGAGAGCAGTAGAATCAAGCTTACGCAGCTTGAACAAGACCTTCAACGGGCACGATCTCAGGGTTTGTTTCTGGGTGCTGGCGGCGGCATTGTCACCTCCGGAGCTGCAATGTTTGATATGGAATATGCAAGGTGGTTGGAAGAGGACCACCGGCAGACGGCGGAGCTGCGTGGGGGATTGGAGGCGCGTCTACCGGACGGGGAGCTGAGAGTGATGGTAGACGCCTGCATTTGCCATTACGACGAAATTTTCCGGCTGAAAGAAGAGGCTGCTAAGTCCGACGTCTTCCATCTCATCACCGGAATTTGGATGTCGCCGGCCGAGCGTTGCTTCCTTTGGATGGGCGGTTTCCGACCATCCGATCTCATTAAGATGTTAATGTCACAATTGGACCCAATAACAGAACAGCAAGTAATGGAAATTTACAAGCTACAGCATTCGTCGCAGCAGGCTGAGGATGCTTTATCCCAAGGCCTGGATCAGCTCCACCACTCTTTAACGGAGACCATCGCCGGCGGTCCGGTCATCGACGGAATCAACCACATGGTTTTGGCCATGGATAAGCTCTCAAATCTCCAAGGCTTTGTTCATCAGGCAGACATTTTGAGACAACAAACGCTTCACCAACTGCATAGGATACTCACTGTTCGACAAGCAGCCAAATGTTTTGTGGTCATTGGTGAATATTATAGTAGATTGAGAGCCCTAAGTTCCATATGGTCCTCTCGTCCAAAGGATGGTTGGGTGATGAGTGGTGAAGATAATTCATGTCAAACATCTACACATCATCAAGTGCATATGGTTGATCAAGCCAACTCGCAGCATCCCTTCTCAAGCATCTAA | 1551 | 45.91 | MASHRVEETGPSSNHLPYNPLLYGINNNNPSSTLINHDGPSFDFGELEQAIVLHGHGAKNKLDPHEPKQSFFSGRPAATLEMFPSWPIKFQQTPRGISLRGREESTDESGSAVNTHTISKSDHQYHQQQHNQLELELELEQESSMSKKACSSSSSGHQGFIQKHLQQQIQPEIMLSDVSTTALSQQHQSPQPKRKGCGSISTSQKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDLQRARSQGLFLGAGGGIVTSGAAMFDMEYARWLEEDHRQTAELRGGLEARLPDGELRVMVDACICHYDEIFRLKEEAAKSDVFHLITGIWMSPAERCFLWMGGFRPSDLIKMLMSQLDPITEQQVMEIYKLQHSSQQAEDALSQGLDQLHHSLTETIAGGPVIDGINHMVLAMDKLSNLQGFVHQADILRQQTLHQLHRILTVRQAAKCFVVIGEYYSRLRALSSIWSSRPKDGWVMSGEDNSCQTSTHHQVHMVDQANSQHPFSSI | 516 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 981518 | 988629 | - | Tan0004550.1 | Tan05g0123 | 751431 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g0123 | 516 | ProSiteProfiles | DOG1 domain profile. | 271 | 479 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Tan05g0123 | 516 | SUPERFAMILY | Leucine zipper domain | 210 | 253 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0123 | 516 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 208 | 252 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0123 | 516 | FunFam | BZIP family transcription factor | 209 | 258 | - | - | |
Tan05g0123 | 516 | CDD | bZIP_HBP1b-like | 210 | 261 | - | - | |
Tan05g0123 | 516 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 140 | 482 | - | - | |
Tan05g0123 | 516 | Pfam | Seed dormancy control | 289 | 364 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Tan05g0123 | 516 | Pfam | bZIP transcription factor | 209 | 251 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0123 | 516 | Gene3D | - | 209 | 258 | - | - | |
Tan05g0123 | 516 | Coils | Coil | 229 | 256 | - | - | |
Tan05g0123 | 516 | MobiDBLite | consensus disorder prediction | 184 | 204 | - | - | |
Tan05g0123 | 516 | MobiDBLite | consensus disorder prediction | 101 | 122 | - | - | |
Tan05g0123 | 516 | SMART | brlzneu | 206 | 280 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0123 | 516 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 213 | 228 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan05g0123 | Tan-Chr5:981518 | Tan05g0125 | Tan-Chr5:981518 | 1.10E-265 | dispersed | |
Tan05g0123 | Tan-Chr5:981518 | Tan05g0124 | Tan-Chr5:981518 | 3.40E-243 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27374 | PF14144 | DOG1 | 4.60E-29 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g0123 | K14431 | - | csv:101223216 | 655.21 |