Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0125 ATGGCGAGCCATAGAGTTGAAGAAACTGGTCCTTCAAGCAATCATCTTCCATACAATCCACTTCTTTATGGAATCAACAACAACAATCCTTCCTCTACTCTGATCAATCACGATGGCCCATCTTTTGATTTTGGAGAATTGGAACAAGCAATTGTTTTACATGGGCACGGAGCTAAGAACAAACTCGATCCTCACGAACCCAAACAAAGCTTTTTCTCAGGCAGGCCTGCAGCAACTCTGGAAATGTTCCCTTCTTGGCCAATCAAATTCCAACAAACTCCAAGAGGAATTAGTTTGAGAGGAAGAGAAGAGAGCACAGATGAGTCAGGATCAGCTGTGAACACTCATACAATAAGCAAATCTGATCATCAATATCATCAACAACAACATAATCAATTGGAATTGGAATTGGAATTGGAACAAGAATCTTCAATGAGTAAAAAGGCATGTTCTTCTTCTTCTTCAGGTCATCAGGGCTTTATTCAGAAGCATCTGCAGCAGCAGATTCAACCTGAAATCATGCTCAGTGATGTTTCAACAACTGCACTATCACAACAACATCAGTCCCCTCAACCAAAGAGAAAAGGATGTGGTTCGATTTCAACATCACAGAAACAACTTGACGCTAAGACATTGAGACGTTTGGCTCAGAACAGAGAGGCTGCGAGGAAGAGTCGACTAAGAAAAAAGGCTTACGTACAGCAACTTGAGAGCAGTAGAATCAAGCTTACGCAGCTTGAACAAGACCTTCAACGGGCACGATCTCAGGGTTTGTTTCTGGGTGCTGGCGGCGGCATTGTCACCTCCGGAGCTGCAATGTTTGATATGGAATATGCAAGGTGGTTGGAAGAGGACCACCGGCAGACGGCGGAGCTGCGTGGGGGATTGGAGGCGCGTCTACCGGACGGGGAGCTGAGAGTGATGGTAGACGCCTGCATTTGCCATTACGACGAAATTTTCCGGCTGAAAGAAGAGGCTGCTAAGTCCGACGTCTTCCATCTCATCACCGGAATTTGGATGTCGCCGGCCGAGCGTTGCTTCCTTTGGATGGGCGGTTTCCGACCATCCGATCTCATTAAGATGTTAATGTCACAATTGGACCCAATAACAGAACAGCAAGTAATGGAAATTTACAAGCTACAGCATTCGTCGCAGCAGGCTGAGGATGCTTTATCCCAAGGCCTGGATCAGCTCCACCACTCTTTAACGGAGACCATCGCCGGCGGTCCGGTCATCGACGGAATCAACCACATGGTTTTGGCCATGGATAAGCTCTCAAATCTCCAAGGCTTTGTTCATCAGGCAGACATTTTGAGACAACAAACGCTTCACCAACTGCATAGGATACTCACTGTTCGACAAGCAGCCAAATGTTTTGTGGTCATTGGTGAATATTATAGTAGATTGAGAGCCCTAAGTTCCATATGGTCCTCTCGTCCAAAGGAGTAA 1449 46.1 MASHRVEETGPSSNHLPYNPLLYGINNNNPSSTLINHDGPSFDFGELEQAIVLHGHGAKNKLDPHEPKQSFFSGRPAATLEMFPSWPIKFQQTPRGISLRGREESTDESGSAVNTHTISKSDHQYHQQQHNQLELELELEQESSMSKKACSSSSSGHQGFIQKHLQQQIQPEIMLSDVSTTALSQQHQSPQPKRKGCGSISTSQKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDLQRARSQGLFLGAGGGIVTSGAAMFDMEYARWLEEDHRQTAELRGGLEARLPDGELRVMVDACICHYDEIFRLKEEAAKSDVFHLITGIWMSPAERCFLWMGGFRPSDLIKMLMSQLDPITEQQVMEIYKLQHSSQQAEDALSQGLDQLHHSLTETIAGGPVIDGINHMVLAMDKLSNLQGFVHQADILRQQTLHQLHRILTVRQAAKCFVVIGEYYSRLRALSSIWSSRPKE 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 981518 988629 - Tan0004550.3 Tan05g0125 751433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0125 482 Pfam Seed dormancy control 289 364 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Tan05g0125 482 ProSiteProfiles DOG1 domain profile. 271 479 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Tan05g0125 482 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 208 252 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0125 482 CDD bZIP_HBP1b-like 210 261 - -
Tan05g0125 482 Coils Coil 229 256 - -
Tan05g0125 482 MobiDBLite consensus disorder prediction 184 204 - -
Tan05g0125 482 MobiDBLite consensus disorder prediction 101 122 - -
Tan05g0125 482 FunFam BZIP family transcription factor 209 258 - -
Tan05g0125 482 PANTHER TRANSCRIPTION FACTOR TGA9 140 482 - -
Tan05g0125 482 SMART brlzneu 206 280 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0125 482 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 213 228 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0125 482 SUPERFAMILY Leucine zipper domain 210 253 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0125 482 Gene3D - 209 258 - -
Tan05g0125 482 Pfam bZIP transcription factor 209 251 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0123 Tan-Chr5:981518 Tan05g0125 Tan-Chr5:981518 1.10E-265 dispersed
Tan05g0125 Tan-Chr5:981518 Tan05g1749 Tan-Chr5:54624792 4.40E-144 dispersed
Tan05g0124 Tan-Chr5:981518 Tan05g0125 Tan-Chr5:981518 1.40E-221 tandem
Tan05g0125 Tan-Chr5:981518 Tan05g0126 Tan-Chr5:981518 5.30E-222 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27376 PF14144 DOG1 4.10E-29 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0125 K14431 - csv:101223216 626.706