Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0193 ATGGGTCAGATTCAGTACTCTGAGAAGTATTTCGACGACACTTACGAGTATAGGCATGTGGTGCTCCCACCCGAAGTGGCAAAGTTGCTTCCGAAGAATCGCCTGCTCTCAGAAAATGAGTGGCGTGCAATTGGAGTTCAGCAGAGTCGTGGGTGGGTGCACTATGCCATTCATCGTCCCGAACCGCATATCATGCTATTCAGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAACCTTGCACAACCAAACGTGCTTGCTGCTAAATGA 270 50.74 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQPNVLAAK 89
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1519407 1521132 + Tan0011358.1 Tan05g0193 751501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0193 89 SUPERFAMILY Cell cycle regulatory proteins 1 82 IPR036858 GO:0016538(InterPro)
Tan05g0193 89 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 3 80 - GO:0000307(PANTHER)|GO:0007346(PANTHER)|GO:0019005(PANTHER)|GO:0019901(PANTHER)|GO:0042393(PANTHER)|GO:0043130(PANTHER)|GO:0061575(PANTHER)
Tan05g0193 89 SMART CKS_2 3 72 IPR000789 GO:0016538(InterPro)
Tan05g0193 89 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538(InterPro)
Tan05g0193 89 FunFam Cyclin-dependent kinases regulatory subunit 1 84 - -
Tan05g0193 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538(InterPro)
Tan05g0193 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538(InterPro)
Tan05g0193 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538(InterPro)
Tan05g0193 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538(InterPro)
Tan05g0193 89 Gene3D - 1 83 IPR036858 GO:0016538(InterPro)
Tan05g0193 89 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0193 Tan-Chr5:1519407 Tan08g1165 Tan-Chr8:26412192 1.40E-43 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0193 K02219 - rcu:8275256 178.718