Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan05g0199 | ATGTTTGATATGCAGGAGCAAGTTGGGAAGCATTTAATGATGAACACCAATGACTTTGAGCTCCAAGATTTCATCCATGGTGACAACTTCGATCAATATGTCAATCTCATTCGTGGAGAGCACGAAAATCCGATATTCAACTTTGATCTTGATTTCATGAATGGTTGCTTGGTCGACAATCGTCTCGATTCAAGTGCCGAATACTTGTTAGATTCCAACATCGTCATGAATTCTGATCCTAATGCATTGTTTAGTACATTGGAGAGTTTCAATAGTATCATGAAAGAAGTTGAAAATGAAGATGAAGATGAAGACGACACTTCTGTAGAGAACTCTTCTGTCACAATGACGACAACCAAGAAACCAAAGGTCGATAGATCGAGAACTTTGATTTCCGAGCGAAGGAGAAGGGGAAGGATGAAGGAAAAGCTTTATGCATTGCGTTCATTGGTTCCAAACATAACTAAGATGGACAAGGCTTCAATTGTAGGGGATGCAGTGCTATATGTGAAAGAGCTTCAAATGCAGGCCAAGAAGCTCAAAGCAGAGATATCAGTTTTGGAATCTTCATTAATCAACGAATCACAAACACATCAAACCCACAAGAAGATTCAAACTTCAAATTCAGACCAATTCCTGCCCAGCAAAATAATTCAGCTGGATGTGTTTCAAGTGGAGGAAAAAGAGTTCTATTTGAGGCTGGTTTGCAAGATGGGTGAAAAAGTAGCCATGTCTCTTTACAAGGTTCTTGAATCCCTTACCAGCTTCAATGTTCAAAGCTCCAACTTGGCCTCTGCTTCTGATAGATTCATTCTCACTGCTACAATTAATGTGAGAGATTGTGAGGTGGAAATGAACTTGCCTAATCTGAAGCTTTGGCTTGCTGGAGCACTTCTTAACCATGGATTTGAGTTTTAA | 918 | 39.65 | MFDMQEQVGKHLMMNTNDFELQDFIHGDNFDQYVNLIRGEHENPIFNFDLDFMNGCLVDNRLDSSAEYLLDSNIVMNSDPNALFSTLESFNSIMKEVENEDEDEDDTSVENSSVTMTTTKKPKVDRSRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLYVKELQMQAKKLKAEISVLESSLINESQTHQTHKKIQTSNSDQFLPSKIIQLDVFQVEEKEFYLRLVCKMGEKVAMSLYKVLESLTSFNVQSSNLASASDRFILTATINVRDCEVEMNLPNLKLWLAGALLNHGFEF | 305 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1560256 | 1561625 | - | Tan0006787.1 | Tan05g0199 | 751507 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan05g0199 | 305 | SMART | finulus | 130 | 179 | IPR011598 | GO:0046983(InterPro) | |
| Tan05g0199 | 305 | FunFam | Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | 120 | 190 | - | - | |
| Tan05g0199 | 305 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 125 | 188 | IPR036638 | GO:0046983(InterPro) | |
| Tan05g0199 | 305 | Pfam | Helix-loop-helix DNA-binding domain | 129 | 174 | IPR011598 | GO:0046983(InterPro) | |
| Tan05g0199 | 305 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 124 | 173 | IPR011598 | GO:0046983(InterPro) | |
| Tan05g0199 | 305 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 99 | 302 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
| Tan05g0199 | 305 | Coils | Coil | 170 | 190 | - | - | |
| Tan05g0199 | 305 | Gene3D | - | 115 | 190 | IPR036638 | GO:0046983(InterPro) | |
| Tan05g0199 | 305 | MobiDBLite | consensus disorder prediction | 98 | 128 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan03g1735 | Tan-Chr3:73273062 | Tan05g0199 | Tan-Chr5:1560256 | 7.30E-10 | dispersed | |
| Tan05g0199 | Tan-Chr5:1560256 | Tan08g0898 | Tan-Chr8:11974965 | 6.90E-18 | dispersed | |
| Tan05g0199 | Tan-Chr5:1560256 | Tan09g1736 | Tan-Chr9:68878886 | 3.10E-18 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 27383 | PF00010 | HLH | 2.90E-09 | No_clan | Tan | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan05g0199 | K26214 | - | csv:101213681 | 454.521 |