Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0199 ATGTTTGATATGCAGGAGCAAGTTGGGAAGCATTTAATGATGAACACCAATGACTTTGAGCTCCAAGATTTCATCCATGGTGACAACTTCGATCAATATGTCAATCTCATTCGTGGAGAGCACGAAAATCCGATATTCAACTTTGATCTTGATTTCATGAATGGTTGCTTGGTCGACAATCGTCTCGATTCAAGTGCCGAATACTTGTTAGATTCCAACATCGTCATGAATTCTGATCCTAATGCATTGTTTAGTACATTGGAGAGTTTCAATAGTATCATGAAAGAAGTTGAAAATGAAGATGAAGATGAAGACGACACTTCTGTAGAGAACTCTTCTGTCACAATGACGACAACCAAGAAACCAAAGGTCGATAGATCGAGAACTTTGATTTCCGAGCGAAGGAGAAGGGGAAGGATGAAGGAAAAGCTTTATGCATTGCGTTCATTGGTTCCAAACATAACTAAGATGGACAAGGCTTCAATTGTAGGGGATGCAGTGCTATATGTGAAAGAGCTTCAAATGCAGGCCAAGAAGCTCAAAGCAGAGATATCAGTTTTGGAATCTTCATTAATCAACGAATCACAAACACATCAAACCCACAAGAAGATTCAAACTTCAAATTCAGACCAATTCCTGCCCAGCAAAATAATTCAGCTGGATGTGTTTCAAGTGGAGGAAAAAGAGTTCTATTTGAGGCTGGTTTGCAAGATGGGTGAAAAAGTAGCCATGTCTCTTTACAAGGTTCTTGAATCCCTTACCAGCTTCAATGTTCAAAGCTCCAACTTGGCCTCTGCTTCTGATAGATTCATTCTCACTGCTACAATTAATGTGAGAGATTGTGAGGTGGAAATGAACTTGCCTAATCTGAAGCTTTGGCTTGCTGGAGCACTTCTTAACCATGGATTTGAGTTTTAA 918 39.65 MFDMQEQVGKHLMMNTNDFELQDFIHGDNFDQYVNLIRGEHENPIFNFDLDFMNGCLVDNRLDSSAEYLLDSNIVMNSDPNALFSTLESFNSIMKEVENEDEDEDDTSVENSSVTMTTTKKPKVDRSRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLYVKELQMQAKKLKAEISVLESSLINESQTHQTHKKIQTSNSDQFLPSKIIQLDVFQVEEKEFYLRLVCKMGEKVAMSLYKVLESLTSFNVQSSNLASASDRFILTATINVRDCEVEMNLPNLKLWLAGALLNHGFEF 305
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 1560256 1561625 - Tan0006787.1 Tan05g0199 751507
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0199 305 SMART finulus 130 179 IPR011598 GO:0046983(InterPro)
Tan05g0199 305 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 120 190 - -
Tan05g0199 305 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 125 188 IPR036638 GO:0046983(InterPro)
Tan05g0199 305 Pfam Helix-loop-helix DNA-binding domain 129 174 IPR011598 GO:0046983(InterPro)
Tan05g0199 305 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 173 IPR011598 GO:0046983(InterPro)
Tan05g0199 305 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 99 302 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Tan05g0199 305 Coils Coil 170 190 - -
Tan05g0199 305 Gene3D - 115 190 IPR036638 GO:0046983(InterPro)
Tan05g0199 305 MobiDBLite consensus disorder prediction 98 128 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1735 Tan-Chr3:73273062 Tan05g0199 Tan-Chr5:1560256 7.30E-10 dispersed
Tan05g0199 Tan-Chr5:1560256 Tan08g0898 Tan-Chr8:11974965 6.90E-18 dispersed
Tan05g0199 Tan-Chr5:1560256 Tan09g1736 Tan-Chr9:68878886 3.10E-18 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27383 PF00010 HLH 2.90E-09 No_clan Tan TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0199 K26214 - csv:101213681 454.521