Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0231 ATGGAAGCAAGCCAGAGCCAGAGCCAGAGCCAGGACATTGCTCCTTGCAACAATGGCCACGTTTCCTCCAATGGGTTTTGCTCGAACGATCCCCTCTACTGGGGGGCCGCAGCGGAGGGGCTCAAAGGGAGCCACGTCGACGAGGTGAAGAGGATGGTTGGGGAGTACCGGCGGGCGGTGGTCCGGCTTGGCGGAGAGAGCCTCACCATTGGCCAGGTCGCGGCGGTCGCACTGCACGACGGCGGCGTGAGGGTGGAGCTGAATGAGTCGGCCAGAGCCGGAGTGAAAGCGAGCAGTGATTGGGTAATGGAGAGCATGAACAAAGGGACTGATAGTTATGGAGTCACCACTGGTTTTGGCGCAACCTCCCATCGAAGGACCAACCAAGGAGCTGCCTTGCAGAAGGAGCTTATTAGATTCTTGAACGCCGGAATATTCGGGCATGGAACAGAGTCGAACCACACGCTGCCGCACACCGCCACAAGAGCCGCCATGTTGGTCAGAATCAACACCCTTCTCCAAGGCTATTCCGGCATCAGATTCGAGATTTTGGAGTCCATTACGAAGCTCCTCAACCACAACGTCACTCCTTGCCTTCCCCTGCGAGGCACCATCACGGCCTCCGGTGATTTGGTTCCCTTTTCCTACATTGCCGGCCTATTGACCGGCCGGCCCAATGCCAAGGCCATCGGCCCCGCCGGCGAGATGCTCGATGCCGGCGCAGCCTTCCAACTCGCCGGCATTAGCGGTGGGTTCTACGAGCTGCAGCCTAAAGAGGGTCTCGCACTTGTCAATGGCACGGGCGTCGGTTCTGGTTTGGCGTCTATTGTTCTGTTCGAGGCCAATGTATTGGCTCTTTTGTCTGAAGTTATTTCGGCAATTTTTGCTGAAGTTATGCAAGGGAAGCCTGAGTTTACTGACCATTTGACTCATAAATTAAAGCACCATCCGGGTCAGATTGAAGCGGCTGCGGTAATGGAGCACATTTTGAATGGGAGTGCTTTTATTAAAGATGCTAAGAAGTTACATGAGTTGGATCCTCTTCAAAAGCCGAAACAAGATCGTTATGCTCTTCGAACTTCACCTCAATGGTTAGGCCCTCAAATTGAAGTGATTCGATATTCGACGAGATCGATTGAGAGAGAGATCAACTCAGTGAATGACAATCCCTTGATTGATGTTTCGAGGAATAAAGCTGTACATGGAGGCAATTTTCAAGGAACTCCAATTGGGGTGTCCATGGATAACACTAGATTGGCTCTTGCCTCAATTGGAAAGCTTTTGTTTGCTCAATTCTCTGAGCTTGTGAATGATTTCTATAACAATGGGCTGCCTTCAAACCTCTCCGGAGGAAGTAATCCAAGCTTGGATTATGGATTCAAAGGGGCCGAAATCGCCATGGCTTCCTATTGCTCGGAGTTGCAATATTTGGCTAATCCCGTCACCAATCATGTTCAGAGTGCAGAGCAACACAACCAAGATGTGAACTCATTGGGTCTAATTTCTTCAAGAAAAACAGCTGAGGCAATAGATATCTTGAAGCTGATGAGCACAACCTTCCTAGTTGCTCTCTGCCAAGCCATAGATTTGAGACACATAGAAGAGAATTTGAAGAGCACTGTGAAAAACACAGTGAGTCAAGTGGCCAAAAAGGTTTTAACAATTGGAGTAAATGGAGAGCTTCATCCTTCAAGATTCTGTGAGAAAGATTTACTCAAAGTCATTGATAGGGAACATGTTTTTGCTTACATTGACGACCCGTGCAGCATGACATATCCTTTGATGCAAAAGCTGAGGCAAGTTCTTGTAGAACATGCATTGAACAACAATGACGATCTAAAGAATTCAAACTCCTCAATCTTTCTGAAGATTGGAGCTTTCGAAGAGGAACTAAAGACCCTTTTGCCAAAAGAAGTAGAAAGTGGAAGGCAAGCCATTGCAAAAGGCAAACCAACTATTCCCAACAAGATTAGGGATTGCAGATCATACCCACTTTACAGATTTGTTAGAGAAGAATTGGGAACTGCTATTTTGACTGGAGAGAAGGTGAAATCCCCTGGGGAAGAATTTGACAAAGTTTTTACTGCAATTTGTGAAGGGAAAATCATCGATCCTCTGCTCGAGTGCCTCGAGCGTTGGGATGGAACTCCTCTTCCTGTAAATTAA 2166 48.2 MEASQSQSQSQDIAPCNNGHVSSNGFCSNDPLYWGAAAEGLKGSHVDEVKRMVGEYRRAVVRLGGESLTIGQVAAVALHDGGVRVELNESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTNQGAALQKELIRFLNAGIFGHGTESNHTLPHTATRAAMLVRINTLLQGYSGIRFEILESITKLLNHNVTPCLPLRGTITASGDLVPFSYIAGLLTGRPNAKAIGPAGEMLDAGAAFQLAGISGGFYELQPKEGLALVNGTGVGSGLASIVLFEANVLALLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAVMEHILNGSAFIKDAKKLHELDPLQKPKQDRYALRTSPQWLGPQIEVIRYSTRSIEREINSVNDNPLIDVSRNKAVHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLSGGSNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSTTFLVALCQAIDLRHIEENLKSTVKNTVSQVAKKVLTIGVNGELHPSRFCEKDLLKVIDREHVFAYIDDPCSMTYPLMQKLRQVLVEHALNNNDDLKNSNSSIFLKIGAFEEELKTLLPKEVESGRQAIAKGKPTIPNKIRDCRSYPLYRFVREELGTAILTGEKVKSPGEEFDKVFTAICEGKIIDPLLECLERWDGTPLPVN 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1770630 1775817 - Tan0006633.1 Tan05g0231 751539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0231 721 CDD PAL-HAL 66 531 IPR001106 -
Tan05g0231 721 Gene3D - 534 655 IPR023144 -
Tan05g0231 721 NCBIfam phenylalanine ammonia-lyase 30 711 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Tan05g0231 721 Gene3D Fumarase/aspartase (Central domain) 269 715 - -
Tan05g0231 721 PANTHER HISTIDINE AMMONIA-LYASE 26 720 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Tan05g0231 721 FunFam Phenylalanine ammonia-lyase 21 267 - -
Tan05g0231 721 SUPERFAMILY L-aspartase-like 30 720 IPR008948 GO:0003824(InterPro)
Tan05g0231 721 FunFam Phenylalanine ammonia-lyase 534 655 - -
Tan05g0231 721 Gene3D - 21 267 IPR024083 -
Tan05g0231 721 Pfam Aromatic amino acid lyase 68 545 IPR001106 -
Tan05g0231 721 FunFam Phenylalanine ammonia-lyase 268 570 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0612 Tan-Chr4:5167652 Tan05g0231 Tan-Chr5:1770630 7.50E-274 dispersed
Tan05g0231 Tan-Chr5:1770630 Tan10g1452 Tan-Chr10:19872823 0.00E+00 dispersed
Tan03g1079 Tan-Chr3:67008633 Tan05g0231 Tan-Chr5:1770630 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0231 K10775 - csv:101218156 1313.52