Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0241 ATGGCTTATGGTAGTTCTAGATCCGTAAGATTCCAAGAGGATCTTGAATCATCTACCCTGCCTACTATCAATGGTGGTGGCGTGAAGAAGATCATATACAACATTGATGGCACACAAATACCAGAATTGAGCGGCAAGAGAACTGAGGTTTCTGGGAAGTCTGGAAGATCCTTGAGAGCTAAAGTTTTGTCTAGAGTTTTCTCTGAGGATTATGAGAGAGTGCAGAGAAAAATATTGGATCCTAGGGGACAAGCTATAAGGCGATGGAATAAGATATTTTTAGTAGCTTGTTTAGTCTCTTTGTTTGTAGACCCGCTTTTCTTTTACTTGCCTACAGTCCGGAATAAGGTCTGCATCGACATAGGAGTAGGTCTTGAAGTCGTCCTCACAACTATAAGATCAATAGCTGATGTTTTCTACACAATTCAGATTTTCATTAAGTTCCGTACAGCTTATGTTGCGCCCTCTTCTCGTGTATTTGGGAGAGGAGAGCTTGTTATAGATCCTTGTAAGATAGCAATAAGGTATCTCCGCCATGGTTTCTGGATTGATTTCATTGCAGCCCTGCCAGTTCCTCAGGTACTGATCTGGATTGTCATCCCCAACCTTAGTGGTTCAACAATGACAAACACCAAGAACTTTCTAAGGTTCTTTCTCATATTCCAGTACCTCCCAAGGCTTTTTCTCATATTTCCTCTCTCAACACAAATTGTTAAGGCCACTGGACTTGTGACACAAACAGCATGGGCTGGAGCTGCTTATAACCTGATTCTTTATATGTTGGCAAGCCATGTTTTAGGAGCCTGCTGGTACCTTCTTTCAATTGAGAGTCAAGAAGCATGCTGGAGAAGACTTTGTAAGCTTGACAAATCTTGTAACGATGGATTCTTCGACTGTCATAAAGTCGATGACCCTCAAAGGGACTCATGGTTTAATACGAGCAACATTAAAAATTCATGCAATCCAAATAATCCCTTTTATCAATTTGGTATATATGGTGATGCAATAACTTTCCATGTCACAACCTCACCATTTTTCAACAAGTACTTCTACTGTCTTTGGTGGGGCCTGAAAAATCTCAGTTCCTTGGGGCAAAATCTTGCCACAAGCACTTTTGTTGGGGAAATACTTTTTGCCATAATTGTGGCAACTCTTGGACTGGTTCTGTTTGCATTGCTCATTGGTAATATGCAGAAATACCTCCAATCGACAACTGTTCGGTTAGAAGAGTGGAGAATAAGGAGAACCGATACAGAACAATGGATGCATCACAGGCAGCTACCTCCAGAGCTCAGACAATCTGTCCGCAGATATGATCAGTATAAGTGGGTGGCGACTCGAGGAGTCGATGAAGAAGCCCTGCTTCGAAGCCTTCCATTGGATCTCCGAAGAGACATAAAACGTCACCTCTGCCTCGACCTCGTTCGAAGGGTTCCATTGTTTGATCAAATGGATGAAAGAATGCTAGATGCAATATGCGAGAGACTTAAACCTGCCTTGAGCACAGAAGGCACATTTCTCGTGCGGGAAGGCGACCCGGTCAATGAAATGTTATTCATAATCAGAGGACATCTCGATTCATATACCACTAATGGCGGTAGAACTGGATTTTTCAACTCCTGTCGCATCGGCCCGGGTGATTTCTGTGGTGAGGAGCTGCTGACTTGGGCTCTTGACCCTCGTCCAAGTGTTGTACTTCCTTCTTCCACTCGGACGGTCAAAGCTATCTCGGAAGTAGAAGCATTTGCTCTCATAGCAGAGGACTTGAAATTTGTATCCTCCCAGTTCAGAAGACTCCACAGCAAACAACTCAGACACAAGTTTCGATTCTACTCGCATCAATGGCGCACGTGGGCTGCGTGCTTTGTTCAAGCAGCATGGCGGCGATATAAGAGACGCAAAGAAAGAGCTGAGCTCAGGGCTAGAGAGAGCTATCCAGCTACTAAGCTCGAGTCCCCACTTTCACCACCAAATGCATCAAACTTAGATGCACGTTCAGGAAACCCTAGAAGGGGGATGAATAAGCGTTGTGTGTCAGATGCTGGGGTTGTAAGCTCGTTGCAGAAACCAGAAGAGCCTGACTTCTCCATTGTTGAGGAATGA 2103 44.13 MAYGSSRSVRFQEDLESSTLPTINGGGVKKIIYNIDGTQIPELSGKRTEVSGKSGRSLRAKVLSRVFSEDYERVQRKILDPRGQAIRRWNKIFLVACLVSLFVDPLFFYLPTVRNKVCIDIGVGLEVVLTTIRSIADVFYTIQIFIKFRTAYVAPSSRVFGRGELVIDPCKIAIRYLRHGFWIDFIAALPVPQVLIWIVIPNLSGSTMTNTKNFLRFFLIFQYLPRLFLIFPLSTQIVKATGLVTQTAWAGAAYNLILYMLASHVLGACWYLLSIESQEACWRRLCKLDKSCNDGFFDCHKVDDPQRDSWFNTSNIKNSCNPNNPFYQFGIYGDAITFHVTTSPFFNKYFYCLWWGLKNLSSLGQNLATSTFVGEILFAIIVATLGLVLFALLIGNMQKYLQSTTVRLEEWRIRRTDTEQWMHHRQLPPELRQSVRRYDQYKWVATRGVDEEALLRSLPLDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAICERLKPALSTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVVLPSSTRTVKAISEVEAFALIAEDLKFVSSQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKRRKERAELRARESYPATKLESPLSPPNASNLDARSGNPRRGMNKRCVSDAGVVSSLQKPEEPDFSIVEE 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1824058 1827135 + Tan0022085.1 Tan05g0241 751549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0241 700 Pfam Cyclic nucleotide-binding domain 503 563 IPR000595 -
Tan05g0241 700 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 59 644 - -
Tan05g0241 700 ProSiteProfiles cAMP/cGMP binding motif profile. 480 577 IPR000595 -
Tan05g0241 700 MobiDBLite consensus disorder prediction 651 667 - -
Tan05g0241 700 CDD CAP_ED 480 611 IPR000595 -
Tan05g0241 700 SUPERFAMILY cAMP-binding domain-like 410 605 IPR018490 -
Tan05g0241 700 FunFam Cyclic nucleotide-gated ion channel 1 407 471 - -
Tan05g0241 700 PRINTS EAG/ELK/ERG potassium channel family signature 261 271 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan05g0241 700 PRINTS EAG/ELK/ERG potassium channel family signature 443 450 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan05g0241 700 PRINTS EAG/ELK/ERG potassium channel family signature 144 153 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan05g0241 700 PRINTS EAG/ELK/ERG potassium channel family signature 393 402 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan05g0241 700 PRINTS EAG/ELK/ERG potassium channel family signature 375 386 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan05g0241 700 PRINTS EAG/ELK/ERG potassium channel family signature 349 366 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Tan05g0241 700 SMART cnmp_10 480 611 IPR000595 -
Tan05g0241 700 MobiDBLite consensus disorder prediction 641 675 - -
Tan05g0241 700 Gene3D Helix hairpin bin 407 471 - -
Tan05g0241 700 SUPERFAMILY Voltage-gated potassium channels 80 402 - -
Tan05g0241 700 Gene3D - 88 404 - -
Tan05g0241 700 Pfam Ion transport protein 88 407 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g0241 700 Gene3D Jelly Rolls 478 598 IPR014710 -
Tan05g0241 700 FunFam Cyclic nucleotide-gated ion channel 1 478 596 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0241 Tan-Chr5:1824058 Tan09g1637 Tan-Chr9:68010666 2.60E-214 dispersed
Tan01g1603 Tan-Chr1:16298161 Tan05g0241 Tan-Chr5:1824058 7.90E-104 transposed
Tan05g3372 Tan-Chr5:85471202 Tan05g0241 Tan-Chr5:1824058 8.70E-110 transposed
Tan07g1291 Tan-Chr7:59875683 Tan05g0241 Tan-Chr5:1824058 8.00E-206 transposed
Tan01g0444 Tan-Chr1:4120342 Tan05g0241 Tan-Chr5:1824058 6.00E-99 transposed
Tan03g1076 Tan-Chr3:66968446 Tan05g0241 Tan-Chr5:1824058 9.50E-192 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0241 K05391 - csv:101210775 1341.25