Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0245 ATGAAAGAAGCAGAGAAAAACTTAGATCCTCAACTATGGCATGCCTGTGCTGGAGGCATGGTCCAGATGCCTGCAATTAACTCCAAGGTCTTTTACTTCCCTCAGGGCCACGCCGAGCACGCTCAGGCCACCGTCGATTTCACTTCTTCACTCAGAATCCCGCCCCTTATTCCTTGTCGAGTGCTCGCCGTCAAGTTCTTGGCCGACCATGAAACGGATGAAGTTTATGCGAATATAAGATTGGTTCCACTGGCGAACAACGAACTCAATTTCGAGGAAGAGGGTGGTTTTGGGAGTAATGGGTCTGAGAATAACATGGAGAAACCGGCTTCCTTTGCCAAGACGTTGACCCAATCCGATGCCAACAACGGCGGTGGGTTCTCGGTTCCTAGGTACTGTGCCGAGACGATATTTCCGCGGCTGGATTACACGGCGGATCCGCCGGTTCAGACGGTGATTGCCAAGGATGTCCACGGCGAGGTTTGGAAGTTCCGGCATATTTACAGGGGGACGCCTCGCCGACATTTGTTAACTACTGGGTGGAGTACTTTTGTCAATCAGAAGAAGCTCGTGGCCGGCGATTCGATTGTTTTTCTGAGATCCAAAAATGGCGACCTCTGTGTTGGAATCCGGCGAGCCAAACGGGCAGTTGGGTGTGCCGCCGATCACCCATATGGCTGGAATCCCGGCGGTGGAAATTGCATCCCACCATATGGTGGATTGACAATGTTTCTGAGAGATGAGGACAACAAGTTGAGTAGAAAAGGGTCTTTGAGTTCTAATGGTGGTGGGAATTTGAGGGGAAAAGGCAAAGTGAGGCCGGAATCAGTGACTGAAGCGGCGGCGCTTGCAGCAAGTGGGCAGCCCTTTGAGGTGGTTTATTACCCACGTGCCAGCACGCCGGAGTTCTGTGTTAAGGCCTCATCGGTGCGAGCCGCCATGAGGATCCAATGGTGCTCTGGTATGAGGTTCAAGATGCCATTTGAGACTGAGGATTCTTCTCGGATTAGTTGGTTTATGGGCACCATTTCTTCTGTTCAAGTTGCTGATCCTATCCGCTGGCCTAATTCTCCATGGCGGCTTCTCCAGGTGACATGGGATGAGCCAGATTTGCTACAGAATGTGAAGCGCGTTAGCCCATGGTTGGTTGAACTGGTATCGAACATGCCAGTCATTCAACTATCACCATTTTCTCCACCAAGAAAGAAGTTTCGACTACCTCAACACCCAGATTTCCCCCTCGACAGCCAATTCCCATTGTCGTCGTTTCCGAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTAACTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCAATTTGGAATATCTTTGTCAGATTTCCATCTCAACAACAAACTGCAATTAGGGCTGGTTCCATCCAGTTTTCAGCAGCTTGATTTTCACTCTAGGATTTCCAATAGATCAGTTACAGACCACAGAGACAGCAGTAGTCAGAACTCATCAGTGTTGCTAAACGGAGAAAAGACTGGTCCAAAGTTGGAAAGGTCCGATTCGGTGAAGAAGCATCAGTTTTTACTCTTTGGTCAACCTATACTCACTGAACAGCAAATCACTTGCAGCTCTTCCGGTGACATTCGCTCACCTCGGACAGAGAAAACCTCCTTAGATGTGAATCTGGAGAGAGTGAAGTTTTTATCTGATGGCTCAGGATCCACTTTCAAGCAGCAGATTTCTCCAAAGAAGTCACCAGGAGCAGGATTCCCATGGTACCAGGGTTATCAAGCCACTGAACTCGGTCTAGACATCGGTCACTGCAAGGTATTTATGGAGTCAGAAGATGTGGGTCGGACGCTCAACCTTTCAGTCATTGGCTCCTATGAAGAACTATACAGGAGGCTTGCGAACATGTTCGGAATGGAAAAACCAGACATTCTCAGCCATGTCCTGTACCAAGATGCAACAGGTGCTGTCAAACAAGCTGGAGATAAACCATTCAGTGATTTTATCAAAACAGCTCGAAGACTAACGATTCTTACAGACTCGGGGTCGGACAAGATTGGAAGGACATTGATAGATGGAATGCGAAATGGTGAAAATGGATTAGATGCCTCAAACAAGACCGGCCCCTTGAGCATATTTGCCTAG 2145 48.67 MKEAEKNLDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQATVDFTSSLRIPPLIPCRVLAVKFLADHETDEVYANIRLVPLANNELNFEEEGGFGSNGSENNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAVGCAADHPYGWNPGGGNCIPPYGGLTMFLRDEDNKLSRKGSLSSNGGGNLRGKGKVRPESVTEAAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSPPRKKFRLPQHPDFPLDSQFPLSSFPSNTLRPSSPMCCLTDNTSVGIQGARHTQFGISLSDFHLNNKLQLGLVPSSFQQLDFHSRISNRSVTDHRDSSSQNSSVLLNGEKTGPKLERSDSVKKHQFLLFGQPILTEQQITCSSSGDIRSPRTEKTSLDVNLERVKFLSDGSGSTFKQQISPKKSPGAGFPWYQGYQATELGLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDSGSDKIGRTLIDGMRNGENGLDASNKTGPLSIFA 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1873929 1878113 + Tan0011997.1 Tan05g0245 751553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0245 714 FunFam Auxin response factor 110 214 - -
Tan05g0245 714 Gene3D - 602 686 - -
Tan05g0245 714 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677(InterPro)
Tan05g0245 714 MobiDBLite consensus disorder prediction 252 271 - -
Tan05g0245 714 MobiDBLite consensus disorder prediction 487 516 - -
Tan05g0245 714 FunFam Auxin response factor 318 391 - -
Tan05g0245 714 Gene3D - 110 214 IPR015300 -
Tan05g0245 714 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 686 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan05g0245 714 SMART B3_2 112 214 IPR003340 GO:0003677(InterPro)
Tan05g0245 714 CDD B3_DNA 111 212 IPR003340 GO:0003677(InterPro)
Tan05g0245 714 Pfam Auxin response factor 280 363 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan05g0245 714 SUPERFAMILY DNA-binding pseudobarrel domain 107 218 IPR015300 -
Tan05g0245 714 MobiDBLite consensus disorder prediction 491 506 - -
Tan05g0245 714 Gene3D - 318 391 - -
Tan05g0245 714 ProSiteProfiles PB1 domain profile. 602 682 IPR053793 -
Tan05g0245 714 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1068 Tan-Chr3:66922724 Tan05g0245 Tan-Chr5:1873929 1.30E-261 dispersed
Tan03g1069 Tan-Chr3:66922724 Tan05g0245 Tan-Chr5:1873929 1.30E-261 dispersed
Tan05g0245 Tan-Chr5:1873929 Tan11g0864 Tan-Chr11:7043824 6.40E-224 dispersed
Tan05g0245 Tan-Chr5:1873929 Tan05g0246 Tan-Chr5:1873929 0.00E+00 tandem
Tan03g1067 Tan-Chr3:66922724 Tan05g0245 Tan-Chr5:1873929 1.30E-261 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27386 PF02362 B3 1.40E-21 CL0405 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0245 K14486 - csv:101216500 1350.5