Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0246 ATGAAAGAAGCAGAGAAAAACTTAGATCCTCAACTATGGCATGCCTGTGCTGGAGGCATGGTCCAGATGCCTGCAATTAACTCCAAGGTCTTTTACTTCCCTCAGGGCCACGCCGAGCACGCTCAGGCCACCGTCGATTTCACTTCTTCACTCAGAATCCCGCCCCTTATTCCTTGTCGAGTGCTCGCCGTCAAGTTCTTGGCCGACCATGAAACGGATGAAGTTTATGCGAATATAAGATTGGTTCCACTGGCGAACAACGAACTCAATTTCGAGGAAGAGGGTGGTTTTGGGAGTAATGGGTCTGAGAATAACATGGAGAAACCGGCTTCCTTTGCCAAGACGTTGACCCAATCCGATGCCAACAACGGCGGTGGGTTCTCGGTTCCTAGGTACTGTGCCGAGACGATATTTCCGCGGCTGGATTACACGGCGGATCCGCCGGTTCAGACGGTGATTGCCAAGGATGTCCACGGCGAGGTTTGGAAGTTCCGGCATATTTACAGGGGGACGCCTCGCCGACATTTGTTAACTACTGGGTGGAGTACTTTTGTCAATCAGAAGAAGCTCGTGGCCGGCGATTCGATTGTTTTTCTGAGATCCAAAAATGGCGACCTCTGTGTTGGAATCCGGCGAGCCAAACGGGCAGTTGGGTGTGCCGCCGATCACCCATATGGCTGGAATCCCGGCGGTGGAAATTGCATCCCACCATATGGTGGATTGACAATGTTTCTGAGAGATGAGGACAACAAGTTGAGTAGAAAAGGGTCTTTGAGTTCTAATGGTGGTGGGAATTTGAGGGGAAAAGGCAAAGTGAGGCCGGAATCAGTGACTGAAGCGGCGGCGCTTGCAGCAAGTGGGCAGCCCTTTGAGGTGGTTTATTACCCACGTGCCAGCACGCCGGAGTTCTGTGTTAAGGCCTCATCGGTGCGAGCCGCCATGAGGATCCAATGGTGCTCTGGTATGAGGTTCAAGATGCCATTTGAGACTGAGGATTCTTCTCGGATTAGTTGGTTTATGGGCACCATTTCTTCTGTTCAAGTTGCTGATCCTATCCGCTGGCCTAATTCTCCATGGCGGCTTCTCCAGGTGACATGGGATGAGCCAGATTTGCTACAGAATGTGAAGCGCGTTAGCCCATGGTTGGTTGAACTGGTATCGAACATGCCAGTCATTCAACTATCACCATTTTCTCCACCAAGAAAGAAGTTTCGACTACCTCAACACCCAGATTTCCCCCTCGACAGCCAATTCCCATTGTCGTCGTTTCCGAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTAACTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCAATTTGGAATATCTTTGTCAGATTTCCATCTCAACAACAAACTGCAATTAGGGCTGGTTCCATCCAGTTTTCAGCAGCTTGATTTTCACTCTAGGATTTCCAATAGATCAGTTACAGACCACAGAGACAGCAGTAGTCAGAACTCATCAGTGTTGCTAAACGGAGAAAAGACTGGTCCAAAGTTGGAAAGGTCCGATTCGGTGAAGAAGCATCAGTTTTTACTCTTTGGTCAACCTATACTCACTGAACAGCAAATCACTTGCAGCTCTTCCGGTGACATTCGCTCACCTCGGACAGAGAAAACCTCCTTAGATGTGAATCTGGAGAGAGTGAAGTTTTTATCTGATGGCTCAGGATCCACTTTCAAGCAGCAGATTTCTCCAAAGAAGTCACCAGGAGCAGGATTCCCATGGTACCAGGGTTATCAAGCCACTGAACTCGGTCTAGACATCGGTCACTGCAAGGTATTTATGGAGTCAGAAGATGTGGGTCGGACGCTCAACCTTTCAGTCATTGGCTCCTATGAAGAACTATACAGGAGGCTTGCGAACATGTTCGGAATGGAAAAACCAGACATTCTCAGCCATGTCCTGTACCAAGATGCAACAGGTGCTGTCAAACAAGCTGGAGATAAACCATTCAGCTCGAAGACTAACGATTCTTACAGACTCGGGGTCGGACAAGATTGGAAGGACATTGATAGATGGAATGCGAAATGGTGA 2076 48.94 MKEAEKNLDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQATVDFTSSLRIPPLIPCRVLAVKFLADHETDEVYANIRLVPLANNELNFEEEGGFGSNGSENNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAVGCAADHPYGWNPGGGNCIPPYGGLTMFLRDEDNKLSRKGSLSSNGGGNLRGKGKVRPESVTEAAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSPPRKKFRLPQHPDFPLDSQFPLSSFPSNTLRPSSPMCCLTDNTSVGIQGARHTQFGISLSDFHLNNKLQLGLVPSSFQQLDFHSRISNRSVTDHRDSSSQNSSVLLNGEKTGPKLERSDSVKKHQFLLFGQPILTEQQITCSSSGDIRSPRTEKTSLDVNLERVKFLSDGSGSTFKQQISPKKSPGAGFPWYQGYQATELGLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSSKTNDSYRLGVGQDWKDIDRWNAKW 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1873929 1878113 + Tan0011997.2 Tan05g0246 751554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0246 691 SUPERFAMILY DNA-binding pseudobarrel domain 107 218 IPR015300 -
Tan05g0246 691 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677(InterPro)
Tan05g0246 691 Gene3D - 318 391 - -
Tan05g0246 691 MobiDBLite consensus disorder prediction 252 271 - -
Tan05g0246 691 MobiDBLite consensus disorder prediction 487 516 - -
Tan05g0246 691 Pfam Auxin response factor 280 363 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan05g0246 691 ProSiteProfiles PB1 domain profile. 602 685 IPR053793 -
Tan05g0246 691 SMART B3_2 112 214 IPR003340 GO:0003677(InterPro)
Tan05g0246 691 Gene3D - 602 682 - -
Tan05g0246 691 CDD B3_DNA 111 212 IPR003340 GO:0003677(InterPro)
Tan05g0246 691 Gene3D - 110 214 IPR015300 -
Tan05g0246 691 FunFam Auxin response factor 318 391 - -
Tan05g0246 691 FunFam Auxin response factor 110 214 - -
Tan05g0246 691 MobiDBLite consensus disorder prediction 491 506 - -
Tan05g0246 691 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677(InterPro)
Tan05g0246 691 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 665 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0246 Tan-Chr5:1873929 Tan11g0864 Tan-Chr11:7043824 1.50E-217 dispersed
Tan05g0245 Tan-Chr5:1873929 Tan05g0246 Tan-Chr5:1873929 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27387 PF02362 B3 1.30E-21 CL0405 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0246 K14486 - csv:101216500 1263.44