Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0250 ATGGCCATGGCTATAGCTCATCACAGAGAGAGTAGTAGTGGGAGCATAACCAGGCATCTTGACAGTACTGGAAAGTACGTTCGATACACTTCAGAGCAGGTTGAGGCTCTTGAGCGAGTCTATGCTGAGTGCCCGAAGCCAAGTTCCCTTCGAAGGCAGCAGCTCATCCGAGAATGCCCAATTCTTTCGAACATAGAGCCCAAACAGATCAAAGTTTGGTTTCAGAATCGCAGATGTAGGGAGAAGCAAAGGAAGGAGGCTTCTCGGCTGCAAACGGTGAACAGGAAATTGAATGCTATGAACAAGTTGTTGATGGAGGAGAATGATCGGCTGCAGAAACAAGTGTCGCAATTGGTGTGTGAAAATGGGTTTATGCGGCAGCAATTGCAAACAGTGCCAGCAGCAACTACTGATGCAAGCTGTGATTCTGTGGTCACCACTCCTCAACCCTCTCGAAGAGATGCTAATAACCCAGCTGGACTCCTCTCAATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATCTTTGCTATTTCACAAAGTTGCGGCGGAGTGGCAGCAAGAGCCTGTGGTCTTGTAAGTTTGGAGCCTTCAAAGATTGCAGAGATCCTTAAAGATCGTCCATCGTGGTTTCGTGATTGTCGAAGCCTTGAGGTTTTTACCATGTTTCCAGCTGGAAATGGTGGGACAATTGAACTTGTTTACACACAGGTATATGCTCCAACTACCCTTGCTCCTGCACGTGATTTTTGGACCCTAAGATACACAATAACTTTGGAAAACGGCAGCCTTGTGGTCTGCGAGAGATCTCTCTCTGGTTCTGGTGCTGGTCCTAGTGCAGCAGCTGCTGCTCAGTTTGTTAGAGCTGAGATGCTCCCAAGTGGTTATTTGATTCGACCATGTGAGGGTGGTGGGTCCATCATACACATTGTAGATCACTTAAATCTTGAGGCATGGAATGTTCCTGAGGTGCTGCGACCACTTTATGAATCATCAAAAGTAGTGGCTCAGAAGATGACTATAGCAGCACTACGGTACGTTAGGCAAATAGCTCAGGAGACGAGTGGTGAAGTGGTTTATGGTTTGGGCCGTCAACCTGCTGTTCTGCGAACCTTTAGCCAAAGATTGAGCAGGGGTTTTAATGATGCAGTGAATGGATTTAACGACAATGGATGGTCATTGATTAATTGTGAAGGCGCTGAGGATGTGGTACTTGCTGTGAACTCTACGAAAAATTTGGGCACAACATCGAACCCTGCTAACTCCTTAACGTATCCCGGGGGAGTTCTTTGTGCAAAGGCTTCCATGCTACTCCAAAATGTTCCTCCTGCTGTGTTAGTTCGTTTCTTGAGAGAACACCGCTCAGAATGGGCCGATTTCAACATTGATGCATACTCTGCAGCAACCCTTAAAGCCAATTCATACGCATATCCAGGGATGAGACCCACAAGGTTTACTGGTAGTCAAATTATCATGCCACTCGGCCACACAATCGAGCATGAAGAGTTCCTTGAAGTTATTCGACTTGAAGGACATCCTATGGTACAAGAAGATGCTTTTGTTTCGAGGGACATTCATCTTCTTCAGATATGTAGTGGAATTGATGAGAATGCTGTAGGAGCCTGTTCAGAACTCATTTTTGCCCCAATTGATGAGATGTTTCCAGACGATGCTCCATTGCTTCCTTCTGGCTTTCGAATCATCCCATTGGATTCCAGAACAAGTGATCCTAAAGGTACGATGACTACACAACGGACCCTGGATCTAACATCGAGCCTTGAAGTGGGTTCTGGAACAAGCAATGCTGCTGGAGATGCATCGACAAGTCAGAGCCCTAGATCAGTGTTAACTATCGCATTCCAGTTTCCTTTCGAAAGCAGCATGCAGGATAACGTAGCAAACATGGCTCACCAGTACGTACGTAGTGTCATTTCCTCGGTGCAGAGAGTTGCGATGGCCATATCTCCTTCTGGGGGCAGTCCAGCACTGGGTCCAAAGCTGTCTCCTGGTTCTCCAGAAGCTCTCACTCTTGCACATTGGATATGCAAGAGTTATAGTTACCAAATGGGAACGGAGTTGATCAGGTCAGATTCCTTGGAGAGTGATTCCCTATTGAAAAATCTCTGGAATCATCAGGATGCAATATTGTGCTGTTCGTTGAAGTCACTACCTGTTTTCATGTTTGCCAACCAAGCTGGGCTTGACATGTTGGAAACAACTCTAGTAGCCTTACAAGACATCACATTGGATAAGATTTTCGACGAGGCGGGTCGCAAAGCCTTGTGTTCTGATTTCCCAAAGTTAATGCAGCAGGGATTTGCATACTTGCCTGGAGGAATCTGTGCATCAACAATGGGGCGACACGTTTCGTACGAACAAGCCATTGCATGGAAAGTCCTCGAGGCAGACGAAACGACAGTACACTGCCTTGCCTTCTCGTTCATAAACTGGTCTTTTGTTTGA 2532 46.76 MAMAIAHHRESSSGSITRHLDSTGKYVRYTSEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLQTVPAATTDASCDSVVTTPQPSRRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLEPSKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTITLENGSLVVCERSLSGSGAGPSAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKVVAQKMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDNGWSLINCEGAEDVVLAVNSTKNLGTTSNPANSLTYPGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFNIDAYSAATLKANSYAYPGMRPTRFTGSQIIMPLGHTIEHEEFLEVIRLEGHPMVQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSRTSDPKGTMTTQRTLDLTSSLEVGSGTSNAAGDASTSQSPRSVLTIAFQFPFESSMQDNVANMAHQYVRSVISSVQRVAMAISPSGGSPALGPKLSPGSPEALTLAHWICKSYSYQMGTELIRSDSLESDSLLKNLWNHQDAILCCSLKSLPVFMFANQAGLDMLETTLVALQDITLDKIFDEAGRKALCSDFPKLMQQGFAYLPGGICASTMGRHVSYEQAIAWKVLEADETTVHCLAFSFINWSFV 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1908925 1916117 - Tan0020324.1 Tan05g0250 751558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0250 843 Coils Coil 80 121 - -
Tan05g0250 843 Pfam START domain 164 372 IPR002913 GO:0008289(InterPro)
Tan05g0250 843 Pfam Homeodomain 25 83 IPR001356 GO:0003677(InterPro)
Tan05g0250 843 CDD homeodomain 25 85 IPR001356 GO:0003677(InterPro)
Tan05g0250 843 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
Tan05g0250 843 Gene3D - 19 91 - -
Tan05g0250 843 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677(InterPro)
Tan05g0250 843 SMART START_1 163 373 IPR002913 GO:0008289(InterPro)
Tan05g0250 843 SMART HOX_1 22 88 IPR001356 GO:0003677(InterPro)
Tan05g0250 843 CDD bZIP 77 116 - -
Tan05g0250 843 Gene3D - 200 378 IPR023393 -
Tan05g0250 843 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 19 843 IPR044830 GO:0003700(InterPro)
Tan05g0250 843 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
Tan05g0250 843 Pfam MEKHLA domain 699 842 IPR013978 -
Tan05g0250 843 SUPERFAMILY Bet v1-like 163 375 - -
Tan05g0250 843 MobiDBLite consensus disorder prediction 598 632 - -
Tan05g0250 843 CDD START_ArGLABRA2_like 158 374 - -
Tan05g0250 843 MobiDBLite consensus disorder prediction 595 632 - -
Tan05g0250 843 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0250 Tan-Chr5:1908925 Tan08g1178 Tan-Chr8:27536019 0.00E+00 dispersed
Tan05g0250 Tan-Chr5:1908925 Tan05g0251 Tan-Chr5:1908925 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27388 PF01852 START 4.20E-46 CL0209 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0250 K09338 - csv:101215773 1606.27