Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0256 ATGGTTTTGCTAATGCGTAGCCGAGCAACCCGAATTCCGAGCCAAAGACTACCAAGACCCGCCCCCGCCCCTCTCATCGATCCCAACGAGCTCACCCAATGGTCCCTCTACCGAGCCACCATCGCCGAGTTCATCGCCACTCTCCTCTTCCTCTACGTCACCGTTTTGACCGTCATCGGCTACTCCCACCAAAGCGACCCAACAGTATCTACCGACCCGTGTAACGGTGTCGGCATCCTCGGCATCGCTTGGGCTTTCGGTGGCATGATCTTCATCCTCGTTTACTGCACCGCCGGTATCTCCGGTGGGCACATAAATCCAGCAGTGACTTTTGGGCTGTTTTTGGGGAGGAAGGTGTCTTTGGTTAGGGCTTTGTTGTACATAATTGCTCAGTGTGCGGGTGCAATCTGTGGGTGTGGATTGGTTAAGGCTTTCCAATCGGCGTACTACGTGAGGTATAATGGTGGGGCCAACATGCTTGCCGATGGCTACAACAAAGGCACTGGCTTGGGAGCTGAAATCATCGGTACCTTTGTTCTTGTCTACACTGTCTTCTCTGCCACTGATCCAAAGAGAAACGCTAGAGATTCCCATGTTCCTGTTTTGGCACCACTTCCAATTGGATTTGCAGTGTTCATGGTTCACTTAGCTACAATCCCCATTACTGGAACTGGAATTAACCCAGCTAGAAGTTTTGGAGCTGCTGTCATATTCAACCATGAAAAGGCCTGGGATGACCAATGGATTTTCTGGGTTGGGCCATTTATTGGAGCTGCAATTGCTGCATTTTACCACCAGTATGTGCTCAGAGCTGCCGCCATTAAAGCTCTTGGATCCTTCAGGAGCAACGCTTGA 855 51.11 MVLLMRSRATRIPSQRLPRPAPAPLIDPNELTQWSLYRATIAEFIATLLFLYVTVLTVIGYSHQSDPTVSTDPCNGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYIIAQCAGAICGCGLVKAFQSAYYVRYNGGANMLADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNHEKAWDDQWIFWVGPFIGAAIAAFYHQYVLRAAAIKALGSFRSNA 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1952043 1955078 + Tan0008193.1 Tan05g0256 751564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0256 284 Gene3D Glycerol uptake facilitator protein. 23 284 IPR023271 -
Tan05g0256 284 SUPERFAMILY Aquaporin-like 29 270 IPR023271 -
Tan05g0256 284 CDD MIP 38 268 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g0256 284 NCBIfam MIP family channel protein 42 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g0256 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 16 282 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Tan05g0256 284 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g0256 284 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g0256 284 PRINTS Major intrinsic protein family signature 172 190 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g0256 284 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g0256 284 PRINTS Major intrinsic protein family signature 208 230 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g0256 284 PRINTS Major intrinsic protein family signature 248 268 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g0256 284 FunFam Probable aquaporin PIP1-2 23 284 - -
Tan05g0256 284 Pfam Major intrinsic protein 30 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan05g0256 284 ProSitePatterns MIP family signature. 104 112 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1064 Tan-Chr3:66869326 Tan05g0256 Tan-Chr5:1952043 4.70E-102 dispersed
Tan04g0596 Tan-Chr4:5061882 Tan05g0256 Tan-Chr5:1952043 5.90E-120 dispersed
Tan05g0256 Tan-Chr5:1952043 Tan11g0853 Tan-Chr11:7002074 1.40E-121 dispersed
Tan03g0641 Tan-Chr3:61657830 Tan05g0256 Tan-Chr5:1952043 6.50E-11 transposed
Tan07g1628 Tan-Chr7:67736079 Tan05g0256 Tan-Chr5:1952043 6.70E-108 transposed
Tan03g1055 Tan-Chr3:66822569 Tan05g0256 Tan-Chr5:1952043 1.70E-108 wgd
Tan05g0256 Tan-Chr5:1952043 Tan08g1884 Tan-Chr8:71178168 2.30E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0256 K09872 - csv:101215300 493.426