Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0270 ATGGAAATTGATCTGAACCAAACAGCCAGTCAGGTGGGCAAGAATGCATATTGCAATGGAAATTGTGAAGAGGGTCGTTGCAATTGTTGTTTATCCTCTTCAACTTCTTCTTGTTCCTCAAATTCATCGCCAACTCCCGTCTCTTCTTCAACTTATTTGGAGCTTTGGCATGCTTGTGCTGGCCCTCTCACCTCATTGCCCAAGAAAGGAAATGTAGTTGTCTATTTCCCACAGGGTCACTTGGAGCAGATTGCCTCAGCCTCTCCCTTTTCCCCCATGGAGATGCGCACTTTTGACCTCCAGCCGCAGATCCTCTGCAGGGTCATCAATGTCCACCTACTTGCCAATAAGGAGAATGATGAGGTCTACACACAACTTACTCTGCTTCCCTTGCCAGAGTTATTAGGCTCTGGTCTAGAGGGCAAAGAGTTGGAGGAATTGGCGTTGAATGGAGCTGATGGAGATGGGAGCGGAGGGTCGCCTACTAGATCTACACCTCACATGTTCTGCAAAACACTCACAGCGTCTGACACGAGCACCCATGGAGGATTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGTTTCCCTCCTCTGGATTACACTCAGCTTAGGCCATCTCAAGAGCTAATTGCCAAGGACCTGCATGGCGTGGAATGGAGATTTAAACATATTTACAGAGGTCAACCTAGGCGGCATCTGCTGACTACTGGATGGAGTATTTTTGTAAGTCAAAAGAATCTTATTTCTGGGGATGCAGTGCTCTTTTTAAGGGGTGAAAATGGAGAGCTAAGGTTGGGAATAAGGCGAGCTGTTCGGCCAAGAAATGGTCTTCCTGAGTCAATTGTCGGCAATCAAAATTCTTGTGCAAATGATCTTGCTCGTGTGGTGAAAGCAATATCCACCAAGAGCATGTTTGATGTGTTTTACAATCCAAGGGCATATCATGCACAGTTTGTTATATCTTGTCAGAAGTATGTGAAGAGCATCAATAATCCAGTGACCGTAGGCACAAGATTCAAAATGAGATTTGAGATGGATGATTCACCAGAAAGAAGGTTTAATGGTGTAGTTGTCGGAATTGGTGACATGGATCCCTTTAGATGGCCGAACTCAAAGTGGAGATGCTTGACGGTCCAATGGGATAAAGACAGTGATCATCAAGAACGTGTTTCCCCCTGGGAGATTGATCCTTCTGTTTCTCTCCCACCCTTGAGTGTTCAGTCTTCTCCAAGGCTGAAGAAACTGAGGACTAGTCTGCAGGCAGCCCCACCTAATAACGCCTTTACTGGAAGGGGCGGTTTTATGGACTTTGAGGATTCAATTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGTATTGTATCACCCTTTTATGGATGTGATACTGCAAAACGTTCACTGGAGTTTGAGGTGCGATCTGCTGCACAACAAAATCAAGCGTCGGGTGGAGTTGAAAAGCTTAATATAGGTGATTATGTAAAGGTTCATCCGAACTCTTCTTTCACAGGCTTTATGGAATCTGATAGATTTCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACCAACAAGAAAATCAGAATATAGTTTAGGTGTTTGGGGAAAGTTCAATCTCAGTGACAACTCTTTTAACACATTTCAATCATCAAACTCCAGTTTTTATCACATGGCGTCAAATGGCGCCCAAAACATGTATTTCCCTCGTCATGAAATTTACAGTACTGGCCAAGCCGCTATGATGCGCTCAAATGATGGCAACTTTCTGAGAGAGAATGCCTTGTTCAACCCATCTGCTGTTGATGCTAGTGTTATCAGGACTAAAATGGAAAGGGCAAATCGATCACTTGATCGGGAGTCTCTACATCTAGTTTCTGCTCCAACTTCAGGGTTGAATATGAATTCAAAGGATGAAAATGTGTCTGAGAACCCAACTGGCTGCAGACTTTTTGGCTTTTCCTTGACTACGGAAACTGCCACAAACATGCAGAGCTCAGGGAAGAGAAGTTGTACCAAGGTTCATAAACAAGGCAGCCTGGTGGGGAGAGCAATTGATCTCTCTAGATTGAATGGCTATACTGATCTGCTTTCTGAACTGGAGCGGCTGTTTAGCATGGAAGGACTCTTAAAAGATCCTGATAAAGGATGGCAAGTACTGTACACCGACAACGAGAACGACGTAATGGTTGTTGGGGATTATCCATGGCACGACTTCTGTGACGCGGTTTCGAAAATCCATATATACACCCAAGAAGAAGTGGAGAAGATGACAAATGGAGTGATGATCAGTGATGATACTCAAAGTTGCTTAGACCAAGCTCCTTTATGTATGGAAGCGTCAAAATCCTCTTCAGTGGGTCAACCTGATTCTTCTCCAACAGTAGTAAGAGAGTTTTAA 2409 44.38 MEIDLNQTASQVGKNAYCNGNCEEGRCNCCLSSSTSSCSSNSSPTPVSSSTYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQIASASPFSPMEMRTFDLQPQILCRVINVHLLANKENDEVYTQLTLLPLPELLGSGLEGKELEELALNGADGDGSGGSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSIFVSQKNLISGDAVLFLRGENGELRLGIRRAVRPRNGLPESIVGNQNSCANDLARVVKAISTKSMFDVFYNPRAYHAQFVISCQKYVKSINNPVTVGTRFKMRFEMDDSPERRFNGVVVGIGDMDPFRWPNSKWRCLTVQWDKDSDHQERVSPWEIDPSVSLPPLSVQSSPRLKKLRTSLQAAPPNNAFTGRGGFMDFEDSIRSSKVLQGQENVGIVSPFYGCDTAKRSLEFEVRSAAQQNQASGGVEKLNIGDYVKVHPNSSFTGFMESDRFLKVLQGQEICSLRPPTRKSEYSLGVWGKFNLSDNSFNTFQSSNSSFYHMASNGAQNMYFPRHEIYSTGQAAMMRSNDGNFLRENALFNPSAVDASVIRTKMERANRSLDRESLHLVSAPTSGLNMNSKDENVSENPTGCRLFGFSLTTETATNMQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYTDLLSELERLFSMEGLLKDPDKGWQVLYTDNENDVMVVGDYPWHDFCDAVSKIHIYTQEEVEKMTNGVMISDDTQSCLDQAPLCMEASKSSSVGQPDSSPTVVREF 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2048686 2055518 + Tan0015262.1 Tan05g0270 751578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0270 802 Gene3D - 333 402 - -
Tan05g0270 802 Pfam AUX/IAA family 664 757 IPR033389 -
Tan05g0270 802 Pfam B3 DNA binding domain 169 270 IPR003340 GO:0003677(InterPro)
Tan05g0270 802 SUPERFAMILY CAD & PB1 domains 674 751 - -
Tan05g0270 802 Gene3D - 167 271 IPR015300 -
Tan05g0270 802 SUPERFAMILY DNA-binding pseudobarrel domain 163 280 IPR015300 -
Tan05g0270 802 FunFam Auxin response factor 167 271 - -
Tan05g0270 802 Pfam Auxin response factor 296 376 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan05g0270 802 CDD B3_DNA 167 269 IPR003340 GO:0003677(InterPro)
Tan05g0270 802 ProSiteProfiles B3 DNA-binding domain profile. 169 271 IPR003340 GO:0003677(InterPro)
Tan05g0270 802 FunFam Auxin response factor 667 761 - -
Tan05g0270 802 Gene3D - 668 761 - -
Tan05g0270 802 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 762 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Tan05g0270 802 ProSiteProfiles PB1 domain profile. 672 756 IPR053793 -
Tan05g0270 802 FunFam Auxin response factor 332 402 - -
Tan05g0270 802 SMART B3_2 169 271 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2524 Tan-Chr3:78575711 Tan05g0270 Tan-Chr5:2048686 2.70E-129 dispersed
Tan05g0270 Tan-Chr5:2048686 Tan11g2197 Tan-Chr11:59274760 5.10E-129 dispersed
Tan05g0270 Tan-Chr5:2048686 Tan01g1062 Tan-Chr1:10454652 2.30E-121 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27391 PF02362 B3 1.10E-20 CL0405 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0270 K14486 - csv:101212503 1422.91