Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0284 ATGGAAGGCAGTGACACAATCACCACCGTTTCATCAACACCACTATCTCAATCTCCTTCTTCTTCTTCTTCTCCCGCTCCGCCGCCGCCCGTCGTTCTCAGTCCTTGCGCGGCCTGCAAGATTTTGAGGCGGCGATGTGCCGAGCGATGTGTGTTGGCGCCTTATTTCCCTCCCACTGAGCCGGCGAAATTCGCCATCGCTCATCGCGTTTTTGGCGCTAGCAATATCATCAAATTCTTGCAGGAACTGCCTGAATCTCAGAGAGCCGATGCAGTGAGCAGCTTGGTTTATGAAGCAAGTGCGAGGATCAGGGACCCTGTTTATGGGTCAGCAGGGGCCATTTGTCAGCTTCAAAAGCAAGTCAATGAGCTTCAAGCGCAGCTAGCCAAGGCTCAGGCCGAGCTCGTAAACATGCAATGCCAACAAGCCAATTTGGTGGCCTTCGTTTGCAGGGAATTAGCTCAATCTCATCAGTCTTTTGATGATTTCAATGCCAGCCCTCACAGTGGCTTCCAATTCCAGAGCATCAGCCAAAGCTACTTTGATGATAGCTCATTGTGGGAGACTCTCTGGACATGA 579 51.47 MEGSDTITTVSSTPLSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAELVNMQCQQANLVAFVCRELAQSHQSFDDFNASPHSGFQFQSISQSYFDDSSLWETLWT 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2133005 2134937 - Tan0004512.1 Tan05g0284 751592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0284 192 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Tan05g0284 192 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
Tan05g0284 192 Coils Coil 114 141 - -
Tan05g0284 192 MobiDBLite consensus disorder prediction 1 20 - -
Tan05g0284 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 34 155 - -
Tan05g0284 192 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2599 Tan-Chr1:39483663 Tan05g0284 Tan-Chr5:2133005 2.40E-47 dispersed
Tan05g0284 Tan-Chr5:2133005 Tan11g0811 Tan-Chr11:6780495 5.10E-43 dispersed
Tan04g0396 Tan-Chr4:3287048 Tan05g0284 Tan-Chr5:2133005 3.90E-49 transposed
Tan01g2596 Tan-Chr1:39333484 Tan05g0284 Tan-Chr5:2133005 3.40E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27392 PF03195 LOB 3.60E-41 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0284 - - - 0.0