Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g0302 | ATGTTTGATCTTAATCTCAATGTCGACTCGCCTGATGCGACTCAGAATGATGACTCCGTCGTGTTCTTTGAGAAGCTTTCTCAAGGCTCGGGGAACCAAATGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCTGATACCTCCAGCAATGGCGGCGATGACGACTCGTGCTCCACACGCGCCGGTGGCGAGCTCTTCACGTTCAACTTCGAGATATTGAAGGCTGGAAGCGCGAGCGACGTTGTCACGAAGGAGTTTTTTCCGATAGGTGGAGCGGTGAATGCTGACTTCGGGATTCTTCAGGGGCATAACTCGGCCTCTTCTTCTTCATCTTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGTTCAGCAGGGGAGGGGAGAATGGTTCAGCCAGTTCAGCCTCAGCCTGTGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGCTCGCAGTACCGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATTTGGGACTGCGGGAAGCAAGTCTATCTCGGTGGATTCGACACTGCACACTCTGCAGCAAGAGCATATGATCGAGCTGCTATCAAGTTCAGAGGGGTCGACGCTGACATTAATTTCAATCTTAGTGATTATGAGGACGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGCACTGGTTTCTCAAGAGGGAGCTCAAAATATAGAGGGGTGACACTACACAAATGTGGCAGATGGGAAGCTAGAATGGGGCAGCTCCTAGGGAAAAAGGCTTATGACAAGGCAGCAATCAAATGTAATGGGCGGGAGGCAGTAACCAACTTTGAGCCTAGCACATACGAAGGAGAGAGAGTTTCTGAGGGCAATATTGAAGGTGGTCGGAACATGCTTGATTTGAATTTAGGGATTTCACCGCCCTCACTTGACAACTGTCCAAAGGATAATGAGGGGCATCTGCGATTCCAATCTGGTCCTTGTTATGCTAATGACAGGAGCACAATGATGGGGAGCAATGCTGATGCAGCAGTTGGCGATCCACCTTTGAAAGGACTGGTAATGACATCAGAGCATGCTCCCTTATGGAACGGTTTACATTCTAGCTTCTTTCCCAGTGAGGAAAGCGTGACAGAGAAGAGACTTGCATTAGGTTCATCCCAAGGAGTCCCCAATTGGGCATGGCAAATCCATGGCCAGGTTAATGCCACCCAAGTGCCACTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATACCTCCGCCGCGCCAACTGGGCTCGATCGCCCATAATCTCCATTTCCCTTCTGCTAAAGCTTCCCTCAACTCCCCTCAGTATCACCACCAGTTGAACCAACAACAGGCACCACCATAA | 1440 | 50.0 | MFDLNLNVDSPDATQNDDSVVFFEKLSQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTFNFEILKAGSASDVVTKEFFPIGGAVNADFGILQGHNSASSSSSSSRKNWINLAFDRSGSAGEGRMVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKAYDKAAIKCNGREAVTNFEPSTYEGERVSEGNIEGGRNMLDLNLGISPPSLDNCPKDNEGHLRFQSGPCYANDRSTMMGSNADAAVGDPPLKGLVMTSEHAPLWNGLHSSFFPSEESVTEKRLALGSSQGVPNWAWQIHGQVNATQVPLFSAAASSGFSFSATHFPAAIPPPRQLGSIAHNLHFPSAKASLNSPQYHHQLNQQQAPP | 479 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2284898 | 2288808 | + | Tan0020240.1 | Tan05g0302 | 751610 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g0302 | 479 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 77 | 309 | - | - | |
Tan05g0302 | 479 | SUPERFAMILY | DNA-binding domain | 248 | 292 | IPR016177 | GO:0003677(InterPro) | |
Tan05g0302 | 479 | SUPERFAMILY | DNA-binding domain | 156 | 214 | IPR016177 | GO:0003677(InterPro) | |
Tan05g0302 | 479 | CDD | AP2 | 157 | 215 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0302 | 479 | FunFam | AP2-like ethylene-responsive transcription factor | 156 | 215 | - | - | |
Tan05g0302 | 479 | ProSiteProfiles | AP2/ERF domain profile. | 157 | 213 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0302 | 479 | MobiDBLite | consensus disorder prediction | 130 | 158 | - | - | |
Tan05g0302 | 479 | MobiDBLite | consensus disorder prediction | 29 | 58 | - | - | |
Tan05g0302 | 479 | CDD | AP2 | 248 | 293 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0302 | 479 | Pfam | AP2 domain | 157 | 205 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0302 | 479 | Gene3D | AP2/ERF domain | 248 | 292 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0302 | 479 | Gene3D | AP2/ERF domain | 156 | 214 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0302 | 479 | SMART | rav1_2 | 249 | 297 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0302 | 479 | SMART | rav1_2 | 157 | 219 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g0382 | Tan-Chr4:3195161 | Tan05g0302 | Tan-Chr5:2284898 | 4.30E-74 | dispersed | |
Tan05g0302 | Tan-Chr5:2284898 | Tan05g0304 | Tan-Chr5:2284898 | 1.10E-280 | dispersed | |
Tan05g0302 | Tan-Chr5:2284898 | Tan05g0303 | Tan-Chr5:2284898 | 1.10E-277 | tandem | |
Tan05g0302 | Tan-Chr5:2284898 | Tan08g1929 | Tan-Chr8:71547037 | 1.10E-105 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27394 | PF00847 | AP2 | 4.20E-10 | CL0081 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g0302 | K09284 | - | csv:101222024 | 838.95 |