Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0302 ATGTTTGATCTTAATCTCAATGTCGACTCGCCTGATGCGACTCAGAATGATGACTCCGTCGTGTTCTTTGAGAAGCTTTCTCAAGGCTCGGGGAACCAAATGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCTGATACCTCCAGCAATGGCGGCGATGACGACTCGTGCTCCACACGCGCCGGTGGCGAGCTCTTCACGTTCAACTTCGAGATATTGAAGGCTGGAAGCGCGAGCGACGTTGTCACGAAGGAGTTTTTTCCGATAGGTGGAGCGGTGAATGCTGACTTCGGGATTCTTCAGGGGCATAACTCGGCCTCTTCTTCTTCATCTTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGTTCAGCAGGGGAGGGGAGAATGGTTCAGCCAGTTCAGCCTCAGCCTGTGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGCTCGCAGTACCGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATTTGGGACTGCGGGAAGCAAGTCTATCTCGGTGGATTCGACACTGCACACTCTGCAGCAAGAGCATATGATCGAGCTGCTATCAAGTTCAGAGGGGTCGACGCTGACATTAATTTCAATCTTAGTGATTATGAGGACGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGCACTGGTTTCTCAAGAGGGAGCTCAAAATATAGAGGGGTGACACTACACAAATGTGGCAGATGGGAAGCTAGAATGGGGCAGCTCCTAGGGAAAAAGGCTTATGACAAGGCAGCAATCAAATGTAATGGGCGGGAGGCAGTAACCAACTTTGAGCCTAGCACATACGAAGGAGAGAGAGTTTCTGAGGGCAATATTGAAGGTGGTCGGAACATGCTTGATTTGAATTTAGGGATTTCACCGCCCTCACTTGACAACTGTCCAAAGGATAATGAGGGGCATCTGCGATTCCAATCTGGTCCTTGTTATGCTAATGACAGGAGCACAATGATGGGGAGCAATGCTGATGCAGCAGTTGGCGATCCACCTTTGAAAGGACTGGTAATGACATCAGAGCATGCTCCCTTATGGAACGGTTTACATTCTAGCTTCTTTCCCAGTGAGGAAAGCGTGACAGAGAAGAGACTTGCATTAGGTTCATCCCAAGGAGTCCCCAATTGGGCATGGCAAATCCATGGCCAGGTTAATGCCACCCAAGTGCCACTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATACCTCCGCCGCGCCAACTGGGCTCGATCGCCCATAATCTCCATTTCCCTTCTGCTAAAGCTTCCCTCAACTCCCCTCAGTATCACCACCAGTTGAACCAACAACAGGCACCACCATAA 1440 50.0 MFDLNLNVDSPDATQNDDSVVFFEKLSQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTFNFEILKAGSASDVVTKEFFPIGGAVNADFGILQGHNSASSSSSSSRKNWINLAFDRSGSAGEGRMVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKAYDKAAIKCNGREAVTNFEPSTYEGERVSEGNIEGGRNMLDLNLGISPPSLDNCPKDNEGHLRFQSGPCYANDRSTMMGSNADAAVGDPPLKGLVMTSEHAPLWNGLHSSFFPSEESVTEKRLALGSSQGVPNWAWQIHGQVNATQVPLFSAAASSGFSFSATHFPAAIPPPRQLGSIAHNLHFPSAKASLNSPQYHHQLNQQQAPP 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2284898 2288808 + Tan0020240.1 Tan05g0302 751610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0302 479 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 77 309 - -
Tan05g0302 479 SUPERFAMILY DNA-binding domain 248 292 IPR016177 GO:0003677(InterPro)
Tan05g0302 479 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677(InterPro)
Tan05g0302 479 CDD AP2 157 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0302 479 FunFam AP2-like ethylene-responsive transcription factor 156 215 - -
Tan05g0302 479 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0302 479 MobiDBLite consensus disorder prediction 130 158 - -
Tan05g0302 479 MobiDBLite consensus disorder prediction 29 58 - -
Tan05g0302 479 CDD AP2 248 293 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0302 479 Pfam AP2 domain 157 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0302 479 Gene3D AP2/ERF domain 248 292 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0302 479 Gene3D AP2/ERF domain 156 214 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0302 479 SMART rav1_2 249 297 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0302 479 SMART rav1_2 157 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0382 Tan-Chr4:3195161 Tan05g0302 Tan-Chr5:2284898 4.30E-74 dispersed
Tan05g0302 Tan-Chr5:2284898 Tan05g0304 Tan-Chr5:2284898 1.10E-280 dispersed
Tan05g0302 Tan-Chr5:2284898 Tan05g0303 Tan-Chr5:2284898 1.10E-277 tandem
Tan05g0302 Tan-Chr5:2284898 Tan08g1929 Tan-Chr8:71547037 1.10E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27394 PF00847 AP2 4.20E-10 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0302 K09284 - csv:101222024 838.95