Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0303 ATGTTTGATCTTAATCTCAATGTCGACTCGCCTGATGCGACTCAGAATGATGACTCCGTCGTGTTCTTTGAGAAGCTTTCTCAAGGCTCGGGGAACCAAATGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCTGATACCTCCAGCAATGGCGGCGATGACGACTCGTGCTCCACACGCGCCGGTGGCGAGCTCTTCACGTTCAACTTCGAGATATTGAAGGCTGGAAGCGCGAGCGACGTTGTCACGAAGGAGTTTTTTCCGATAGGTGGAGCGGTGAATGCTGACTTCGGGATTCTTCAGGGGCATAACTCGGCCTCTTCTTCTTCATCTTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGTTCAGCAGGGGAGGGGAGAATGGTTCAGCCAGTTCAGCCTCAGCCTGTGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGCTCGCAGTACCGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATTTGGGACTGCGGGAAGCAAGTCTATCTCGGTGGATTCGACACTGCACACTCTGCAGCAAGAGCATATGATCGAGCTGCTATCAAGTTCAGAGGGGTCGACGCTGACATTAATTTCAATCTTAGTGATTATGAGGACGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGCACTGGTTTCTCAAGAGGGAGCTCAAAATATAGAGGGGTGACACTACACAAATGTGGCAGATGGGAAGCTAGAATGGGGCAGCTCCTAGGGAAAAAGTATATATATCTTGGGCTATTCGACAGCGAGGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCAATCAAATGTAATGGGCGGGAGGCAGTAACCAACTTTGAGCCTAGCACATACGAAGGAGAGAGAGTTTCTGAGGGCAATATTGAAGGTGGTCGGAACATGCTTGATTTGAATTTAGGGATTTCACCGCCCTCACTTGACAACTGTCCAAAGGATAATGAGGGGCATCTGCGATTCCAATCTGGTCCTTGTTATGCTAATGACAGGAGCACAATGATGGGGAGCAATGCTGATGCAGCAGTTGGCGATCCACCTTTGAAAGGACTGGTAATGACATCAGAGCATGCTCCCTTATGGAACGGTTTACATTCTAGCTTCTTTCCCAGTGAGGAAAGCGTGACAGAGAAGAGACTTGCATTAGGTTCATCCCAAGGAGTCCCCAATTGGGCATGGCAAATCCATGGCCAGGTTAATGCCACCCAAGTGCCACTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATACCTCCGCCGCGCCAACTGGGCTCGATCGCCCATAATCTCCATTTCCCTTCTGCTAAAGCTTCCCTCAACTCCCCTCAGTATCACCACCAGTTGAACCAACAACAGGCACCACCATAA 1485 49.83 MFDLNLNVDSPDATQNDDSVVFFEKLSQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTFNFEILKAGSASDVVTKEFFPIGGAVNADFGILQGHNSASSSSSSSRKNWINLAFDRSGSAGEGRMVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGERVSEGNIEGGRNMLDLNLGISPPSLDNCPKDNEGHLRFQSGPCYANDRSTMMGSNADAAVGDPPLKGLVMTSEHAPLWNGLHSSFFPSEESVTEKRLALGSSQGVPNWAWQIHGQVNATQVPLFSAAASSGFSFSATHFPAAIPPPRQLGSIAHNLHFPSAKASLNSPQYHHQLNQQQAPP 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2284898 2288808 + Tan0020240.2 Tan05g0303 751611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0303 494 FunFam AP2-like ethylene-responsive transcription factor 156 215 - -
Tan05g0303 494 CDD AP2 157 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0303 494 Gene3D AP2/ERF domain 156 214 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0303 494 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0303 494 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0303 494 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0303 494 FunFam AP2-like ethylene-responsive transcription factor 248 308 - -
Tan05g0303 494 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677(InterPro)
Tan05g0303 494 SUPERFAMILY DNA-binding domain 248 307 IPR016177 GO:0003677(InterPro)
Tan05g0303 494 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 79 324 - -
Tan05g0303 494 CDD AP2 248 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0303 494 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0303 494 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0303 494 MobiDBLite consensus disorder prediction 130 158 - -
Tan05g0303 494 MobiDBLite consensus disorder prediction 29 58 - -
Tan05g0303 494 SMART rav1_2 249 312 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0303 494 SMART rav1_2 157 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0303 494 Pfam AP2 domain 157 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan05g0303 494 Pfam AP2 domain 248 298 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1036 Tan-Chr3:66676086 Tan05g0303 Tan-Chr5:2284898 1.10E-104 dispersed
Tan05g0303 Tan-Chr5:2284898 Tan08g1929 Tan-Chr8:71547037 1.60E-117 dispersed
Tan05g0302 Tan-Chr5:2284898 Tan05g0303 Tan-Chr5:2284898 1.10E-277 tandem
Tan05g0303 Tan-Chr5:2284898 Tan05g0304 Tan-Chr5:2284898 6.90E-278 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27395 PF00847 AP2 3.10E-09 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0303 K09284 - csv:101222024 877.856