Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g0303 | ATGTTTGATCTTAATCTCAATGTCGACTCGCCTGATGCGACTCAGAATGATGACTCCGTCGTGTTCTTTGAGAAGCTTTCTCAAGGCTCGGGGAACCAAATGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCTGATACCTCCAGCAATGGCGGCGATGACGACTCGTGCTCCACACGCGCCGGTGGCGAGCTCTTCACGTTCAACTTCGAGATATTGAAGGCTGGAAGCGCGAGCGACGTTGTCACGAAGGAGTTTTTTCCGATAGGTGGAGCGGTGAATGCTGACTTCGGGATTCTTCAGGGGCATAACTCGGCCTCTTCTTCTTCATCTTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGTTCAGCAGGGGAGGGGAGAATGGTTCAGCCAGTTCAGCCTCAGCCTGTGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGCTCGCAGTACCGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATTTGGGACTGCGGGAAGCAAGTCTATCTCGGTGGATTCGACACTGCACACTCTGCAGCAAGAGCATATGATCGAGCTGCTATCAAGTTCAGAGGGGTCGACGCTGACATTAATTTCAATCTTAGTGATTATGAGGACGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGCACTGGTTTCTCAAGAGGGAGCTCAAAATATAGAGGGGTGACACTACACAAATGTGGCAGATGGGAAGCTAGAATGGGGCAGCTCCTAGGGAAAAAGTATATATATCTTGGGCTATTCGACAGCGAGGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCAATCAAATGTAATGGGCGGGAGGCAGTAACCAACTTTGAGCCTAGCACATACGAAGGAGAGAGAGTTTCTGAGGGCAATATTGAAGGTGGTCGGAACATGCTTGATTTGAATTTAGGGATTTCACCGCCCTCACTTGACAACTGTCCAAAGGATAATGAGGGGCATCTGCGATTCCAATCTGGTCCTTGTTATGCTAATGACAGGAGCACAATGATGGGGAGCAATGCTGATGCAGCAGTTGGCGATCCACCTTTGAAAGGACTGGTAATGACATCAGAGCATGCTCCCTTATGGAACGGTTTACATTCTAGCTTCTTTCCCAGTGAGGAAAGCGTGACAGAGAAGAGACTTGCATTAGGTTCATCCCAAGGAGTCCCCAATTGGGCATGGCAAATCCATGGCCAGGTTAATGCCACCCAAGTGCCACTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATACCTCCGCCGCGCCAACTGGGCTCGATCGCCCATAATCTCCATTTCCCTTCTGCTAAAGCTTCCCTCAACTCCCCTCAGTATCACCACCAGTTGAACCAACAACAGGCACCACCATAA | 1485 | 49.83 | MFDLNLNVDSPDATQNDDSVVFFEKLSQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTFNFEILKAGSASDVVTKEFFPIGGAVNADFGILQGHNSASSSSSSSRKNWINLAFDRSGSAGEGRMVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGERVSEGNIEGGRNMLDLNLGISPPSLDNCPKDNEGHLRFQSGPCYANDRSTMMGSNADAAVGDPPLKGLVMTSEHAPLWNGLHSSFFPSEESVTEKRLALGSSQGVPNWAWQIHGQVNATQVPLFSAAASSGFSFSATHFPAAIPPPRQLGSIAHNLHFPSAKASLNSPQYHHQLNQQQAPP | 494 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2284898 | 2288808 | + | Tan0020240.2 | Tan05g0303 | 751611 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g0303 | 494 | FunFam | AP2-like ethylene-responsive transcription factor | 156 | 215 | - | - | |
Tan05g0303 | 494 | CDD | AP2 | 157 | 215 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0303 | 494 | Gene3D | AP2/ERF domain | 156 | 214 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0303 | 494 | Gene3D | AP2/ERF domain | 248 | 307 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0303 | 494 | PRINTS | Ethylene responsive element binding protein signature | 250 | 261 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0303 | 494 | PRINTS | Ethylene responsive element binding protein signature | 288 | 308 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0303 | 494 | FunFam | AP2-like ethylene-responsive transcription factor | 248 | 308 | - | - | |
Tan05g0303 | 494 | SUPERFAMILY | DNA-binding domain | 156 | 214 | IPR016177 | GO:0003677(InterPro) | |
Tan05g0303 | 494 | SUPERFAMILY | DNA-binding domain | 248 | 307 | IPR016177 | GO:0003677(InterPro) | |
Tan05g0303 | 494 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 79 | 324 | - | - | |
Tan05g0303 | 494 | CDD | AP2 | 248 | 308 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0303 | 494 | ProSiteProfiles | AP2/ERF domain profile. | 157 | 213 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0303 | 494 | ProSiteProfiles | AP2/ERF domain profile. | 249 | 306 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0303 | 494 | MobiDBLite | consensus disorder prediction | 130 | 158 | - | - | |
Tan05g0303 | 494 | MobiDBLite | consensus disorder prediction | 29 | 58 | - | - | |
Tan05g0303 | 494 | SMART | rav1_2 | 249 | 312 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0303 | 494 | SMART | rav1_2 | 157 | 219 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0303 | 494 | Pfam | AP2 domain | 157 | 205 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan05g0303 | 494 | Pfam | AP2 domain | 248 | 298 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan03g1036 | Tan-Chr3:66676086 | Tan05g0303 | Tan-Chr5:2284898 | 1.10E-104 | dispersed | |
Tan05g0303 | Tan-Chr5:2284898 | Tan08g1929 | Tan-Chr8:71547037 | 1.60E-117 | dispersed | |
Tan05g0302 | Tan-Chr5:2284898 | Tan05g0303 | Tan-Chr5:2284898 | 1.10E-277 | tandem | |
Tan05g0303 | Tan-Chr5:2284898 | Tan05g0304 | Tan-Chr5:2284898 | 6.90E-278 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27395 | PF00847 | AP2 | 3.10E-09 | CL0081 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g0303 | K09284 | - | csv:101222024 | 877.856 |