Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0358 ATGACAAAGGGTCCTGGACATGAAAATGATGCAAATTCAACTTTCAACAGCCCGTCATTATTGGACACAAAGCGGGCACATCAGTGGTTTATAGATGGTTGTGAGGGACAGGTTTTCCCCAACAAGAAGCAAGCAATTCAAGCTCCAGATAGTAAAATGACTGGAGCACTGTCAAATGTGAACGTTCTTCATTGGGAGCAGCACCCTGCTAATTATCAGTCGGTTTCACATCAACTTATTGGTCGCATATTTGGACCAGAATCAGTGAGGTCTGCTGACTTTGATCTAACAAAAGCATCTTCTGTAATTCCTGATAATTTTGGTCTCAGGAGAAAAGGTATGGAAGACCAATTTGGAGAGGATCCATCTGTGGGGTTGTCTATATCTCATGGTAGGGAGGATCCTGAAACATCTCTTAGCTATGGGGGAATTAGAAAAGTGAAAATCAACCAGGTTAAAGATAATATACATGGTCTGCAACCATGTCTAAGAAATAATTCTAATAGAGAAGATGGTGGCCAACTATCCATAGAAGGTTACTATAAGGAAATTGAATCAGGTCTTGCATCTGTGGGATCAGCCTATATTAAGGAGGACGATAGTTTCAATTTGATAAATCAAACCTCCAATGATGGGGATCGCCATATTGGGTTTATAAGTCATAGCGGGAAGATAGATGACAATGTTGTCTCCATTGATGATGATTACAATAAGCGGGATCCAAATATAATTTCATTTGGTGGATTTCCTGATGAGCAAGATCTTATCTCTTTAGGCAGGTCTCTTGGAAGTCATGACCCAACTTTCTACGAATCTTCATTCCAACCATCTGAAGTTATTGGTCTCACAGATCTGGAATCATCAAATTTTGATGTAGCTGTAAGCAGTACTCAGATAGCTAAGCAAAAGCTTGATACGACATCGAAGAGTAGACCAGAATACAAAATGAGGAAAGAAGCTCCAAACAGCTTTCCTTCGAATGTTAGAAGTTTGATATCAACCGGTATGCTCGATGGTGTTCCTGTGAAGTATGTCTCCATAGCCAGAGAGGAGCTTCGTGGAATTATAAGGGGATCTGGCTATCTTTGTGGATGCCAATCTTGCAACTTTTCCAAGATGCTTAATGCTTATGAGTTTGAGCGGCATGCTGGCTGCAAAACAAAACACCCAAATAACCATATATACTTTGAGAATGGGAAGACTATTTACCAGATAGTACAAGAATTAAGAAGCACTCCTGAGAGCTTGTTGTTTGATACTATTCAAACCATCTTTGGTGCCCCTATCAATCAGAAATCTTTTCGGATTTGGAAAGAATCATTTCAAGCGGCTACCCGTGAGCTTCAACGCATATATGGCAAGGATGAACTTAACCTTTAG 1380 40.22 MTKGPGHENDANSTFNSPSLLDTKRAHQWFIDGCEGQVFPNKKQAIQAPDSKMTGALSNVNVLHWEQHPANYQSVSHQLIGRIFGPESVRSADFDLTKASSVIPDNFGLRRKGMEDQFGEDPSVGLSISHGREDPETSLSYGGIRKVKINQVKDNIHGLQPCLRNNSNREDGGQLSIEGYYKEIESGLASVGSAYIKEDDSFNLINQTSNDGDRHIGFISHSGKIDDNVVSIDDDYNKRDPNIISFGGFPDEQDLISLGRSLGSHDPTFYESSFQPSEVIGLTDLESSNFDVAVSSTQIAKQKLDTTSKSRPEYKMRKEAPNSFPSNVRSLISTGMLDGVPVKYVSIAREELRGIIRGSGYLCGCQSCNFSKMLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESLLFDTIQTIFGAPINQKSFRIWKESFQAATRELQRIYGKDELNL 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2652497 2655956 + Tan0016393.2 Tan05g0358 751666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0358 459 Pfam Tify domain binding domain 354 409 IPR032308 -
Tan05g0358 459 PANTHER AUTOIMMUNE REGULATOR 23 443 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0358 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0358 Tan-Chr5:2652497 Tan05g0360 Tan-Chr5:2652497 1.20E-271 dispersed
Tan05g0357 Tan-Chr5:2652497 Tan05g0358 Tan-Chr5:2652497 6.40E-204 tandem
Tan05g0358 Tan-Chr5:2652497 Tan05g0359 Tan-Chr5:2652497 1.20E-271 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g395 . . . . . . Bma14g00490 . . . . . . . . Cpe05g00901 . . . . . . . . Cla02g01990 Cam02g2110 Cec02g2150 Cco02g2180 Clacu02g2097 . . . . . . . Csa06g01725 . Cme11g01269 . . . . . Bpe11g00777 . . Sed05g2941 Cmo02g00831 Cmo20g00463 . Cma20g00425 Car02g00597 Car20g00370 . . Bhi10g00666 Tan05g0358 Cmetu11g0841 . Hepe08g0810 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g4335 . 654 1242 PHD Transcription Factor Family AT3G14980 52.1 1.1e-167 588.6
Tan01g4336 . 654 1236 PHD Transcription Factor Family AT3G14980 51.4 7.2e-164 575.9
Tan08g1981 . 18 837 PHD Transcription Factor Family AT3G53680 54.3 2.9e-252 869.0
Tan04g0317 . 439 565 PHD Transcription Factor Family AT3G53680 55.1 6.3e-37 153.7
Tan05g0358 . 316 442 PHD Transcription Factor Family AT3G53680 53.9 1.4e-36 152.5
Tan05g0359 . 322 448 PHD Transcription Factor Family AT3G53680 53.9 1.4e-36 152.5
Tan05g0360 . 322 448 PHD Transcription Factor Family AT3G53680 53.9 1.4e-36 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004604 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 4 3 42