Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0378 ATGGGGGAGGAGAACAATGGCGGCTCCTTTCGGAGTTTGATCAACTTGGTGAACGATGTAGCTTCAATCTCAGATTATAGGTACGCGGTCAAAAAGCAGTATTGTAATTTAGCTAGGCGACTGAAGCTGTTGATCCCAATGTTTGAAGAGATGAGGGATATGAAGCAGGCGCTGCCGGATGACACCGTGAGAGCTCTTGCTTCGTTGAAGGAAGCTCTGGAATCGACCAAGGAGTTGCTTAGACTTGGGAGCGAGGGGAGCAAGATTTGTCTGGCCTTGGATAGAGAGCAAATTTTGAATCAATTTCACGAGGTGACAGCAAGGCTAGAGCAAGCTCTGAATGAAATTTCACATGAAGATCTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCTCTCTCAATTCAAAAGAGCTAAAGGAAGGATCGATACCCAAGATGCCGAGATGTATGATAACCTCAACTCTCTCTATAACAACAGCAAAGATTCTGCTTCTGATCCTTCTGTCTTGAAGGGACTGGCCGAGAAGTTGCAGCTAATGGATATAGCTGATCTTACTCAAGAGTCTCTTGCTTTGCATGAAATGGTTTCGGCTAGCGATGGAGATCCAGGGGGGAGATTTGAGAAAATGTCAATACTATTGAAGAAAATAAAAGATTTTATGTTAACTGAAAACCCTGAAATTGGCGTTCCTTCAAAAGAACAAAGTCATCCTCGCACTGGTGGACAAGTGACTGTTGGGAAGAAAGATTTAGCGTCCCTTGAGATACCTGAAGACTTTCGCTGCCCCATATCCCTAGATTTGATGAAAGATCCCGTCATTGTCTCCACGGGACAGACCTATGAACGTACTTTCATTGAGAAGTGGCTGGCAGACGGACACTCAACATGCCCAAAAACTCAACAAGTCCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTTATTGCTCAATGGTGTGAGACCAATGGGATTGAACTACCACAACGTTCCAGCAGTTCTCAGCCCAGTGAATTCATGACTCCTGCTGAACGCTCCAAGTATGAAACTCTACTTCACAAACTCACATCAAGTAACATTGAAGACAAGCGATCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAGCGCAATGCCAGTAATCGGGTGGCCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTCGGCCTCCTTTCAACAACGGACCCCCTCACTCAAGAACATGCTGTGACAGCATTGCTTAACCTTTCAATTTGTGACAATAATAAGAGAAGTATCATGTCCTGTAGGGCAGCACCTGCCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCAGCCACTCTTTTCAGCCTTTCTGTCGTAGATGAATATAAAATAACGATTGGCGCGTCGGGAGCCATTCCGCCACTTATTACCCTGCTCAATGAAGGTACTCAAAGAGGAAAGAAGGACGCTGCAACTGCTCTTTTCAACTTGTGTTTCTACCAAGGGAACAAAGTAAAGGCAGTCAGGGGTGGTGTTGTTTCCATACTGATGCAGCTGTTGACAGAATCTAGAATAGGGATGGTAGATGAGGCCCTGGCAATTTTAGCCATACTTGCCAGCAATTCTGAAGGACGGGCTGCCATTGGAGCAGCCGATTCTGTCCCCGTTTTAGTAGATTTCATTGCAACAGGATCCCCTAGGAACAGGGAGAATGCAGCTGCAGTTTTGGTGCATCTTTGTGCAGGAGACAAGCGACATCTGGTGGAAGCGAAGGAGCTCGGAGTGATTAGTTTGCTTATAGATTTGGCAGAAAATGGCACAGACAGAGGTAAGCGAAAAGCGACACAATTGCTCGACCAAATAAACAGGTTTACAGAGCAGCAGAAAGAGGCTGAGGCTCAATCTCAGATCCCCCTGTTGCTGCCACCACCTTCCGCAATCGGCAACGTCGAAAGCTGA 1977 46.08 MGEENNGGSFRSLINLVNDVASISDYRYAVKKQYCNLARRLKLLIPMFEEMRDMKQALPDDTVRALASLKEALESTKELLRLGSEGSKICLALDREQILNQFHEVTARLEQALNEISHEDLDISDEVKEQVELVLSQFKRAKGRIDTQDAEMYDNLNSLYNNSKDSASDPSVLKGLAEKLQLMDIADLTQESLALHEMVSASDGDPGGRFEKMSILLKKIKDFMLTENPEIGVPSKEQSHPRTGGQVTVGKKDLASLEIPEDFRCPISLDLMKDPVIVSTGQTYERTFIEKWLADGHSTCPKTQQVLTSKILTPNYVLRSLIAQWCETNGIELPQRSSSSQPSEFMTPAERSKYETLLHKLTSSNIEDKRSAAGEIRLLAKRNASNRVAIAEAGAIPLLVGLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPAIVHVLKWGSMEARENAAATLFSLSVVDEYKITIGASGAIPPLITLLNEGTQRGKKDAATALFNLCFYQGNKVKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAADSVPVLVDFIATGSPRNRENAAAVLVHLCAGDKRHLVEAKELGVISLLIDLAENGTDRGKRKATQLLDQINRFTEQQKEAEAQSQIPLLLPPPSAIGNVES 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2751092 2755896 - Tan0012459.2 Tan05g0378 751686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0378 658 PANTHER U BOX DOMAIN-CONTAINING 30 628 - -
Tan05g0378 658 CDD MLKL_NTD 31 139 - -
Tan05g0378 658 SMART arm_5 465 505 IPR000225 GO:0005515(InterPro)
Tan05g0378 658 SMART arm_5 424 464 IPR000225 GO:0005515(InterPro)
Tan05g0378 658 SMART arm_5 589 629 IPR000225 GO:0005515(InterPro)
Tan05g0378 658 SMART arm_5 547 587 IPR000225 GO:0005515(InterPro)
Tan05g0378 658 SMART arm_5 383 423 IPR000225 GO:0005515(InterPro)
Tan05g0378 658 SMART arm_5 506 546 IPR000225 GO:0005515(InterPro)
Tan05g0378 658 FunFam RING-type E3 ubiquitin transferase 7 119 - -
Tan05g0378 658 FunFam RING-type E3 ubiquitin transferase 337 634 - -
Tan05g0378 658 Coils Coil 620 640 - -
Tan05g0378 658 SMART Ubox_2 262 325 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan05g0378 658 SUPERFAMILY ARM repeat 355 646 IPR016024 -
Tan05g0378 658 Coils Coil 95 115 - -
Tan05g0378 658 Pfam Armadillo/beta-catenin-like repeat 466 504 IPR000225 GO:0005515(InterPro)
Tan05g0378 658 Pfam Armadillo/beta-catenin-like repeat 384 422 IPR000225 GO:0005515(InterPro)
Tan05g0378 658 Pfam Mixed lineage kinase domain-like N-terminal domain 29 118 IPR054000 -
Tan05g0378 658 Gene3D - 9 119 IPR036537 GO:0007166(InterPro)
Tan05g0378 658 CDD RING-Ubox_PUB 260 312 IPR045210 -
Tan05g0378 658 Pfam U-box domain 259 329 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan05g0378 658 SUPERFAMILY RING/U-box 253 334 - -
Tan05g0378 658 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 394 432 IPR000225 GO:0005515(InterPro)
Tan05g0378 658 Gene3D - 338 490 IPR011989 -
Tan05g0378 658 Gene3D - 493 649 IPR011989 -
Tan05g0378 658 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan05g0378 658 FunFam RING-type E3 ubiquitin transferase 256 332 - -
Tan05g0378 658 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 332 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2462 Tan-Chr1:31419204 Tan05g0378 Tan-Chr5:2751092 1.10E-169 dispersed
Tan03g2242 Tan-Chr3:76767479 Tan05g0378 Tan-Chr5:2751092 6.30E-15 dispersed
Tan04g0628 Tan-Chr4:5304952 Tan05g0378 Tan-Chr5:2751092 4.60E-125 dispersed
Tan05g0378 Tan-Chr5:2751092 Tan05g1058 Tan-Chr5:8918421 5.00E-74 dispersed
Tan05g0377 Tan-Chr5:2751092 Tan05g0378 Tan-Chr5:2751092 8.30E-303 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0378 K27628 - csv:101221150 1100.89