Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g0378 | ATGGGGGAGGAGAACAATGGCGGCTCCTTTCGGAGTTTGATCAACTTGGTGAACGATGTAGCTTCAATCTCAGATTATAGGTACGCGGTCAAAAAGCAGTATTGTAATTTAGCTAGGCGACTGAAGCTGTTGATCCCAATGTTTGAAGAGATGAGGGATATGAAGCAGGCGCTGCCGGATGACACCGTGAGAGCTCTTGCTTCGTTGAAGGAAGCTCTGGAATCGACCAAGGAGTTGCTTAGACTTGGGAGCGAGGGGAGCAAGATTTGTCTGGCCTTGGATAGAGAGCAAATTTTGAATCAATTTCACGAGGTGACAGCAAGGCTAGAGCAAGCTCTGAATGAAATTTCACATGAAGATCTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCTCTCTCAATTCAAAAGAGCTAAAGGAAGGATCGATACCCAAGATGCCGAGATGTATGATAACCTCAACTCTCTCTATAACAACAGCAAAGATTCTGCTTCTGATCCTTCTGTCTTGAAGGGACTGGCCGAGAAGTTGCAGCTAATGGATATAGCTGATCTTACTCAAGAGTCTCTTGCTTTGCATGAAATGGTTTCGGCTAGCGATGGAGATCCAGGGGGGAGATTTGAGAAAATGTCAATACTATTGAAGAAAATAAAAGATTTTATGTTAACTGAAAACCCTGAAATTGGCGTTCCTTCAAAAGAACAAAGTCATCCTCGCACTGGTGGACAAGTGACTGTTGGGAAGAAAGATTTAGCGTCCCTTGAGATACCTGAAGACTTTCGCTGCCCCATATCCCTAGATTTGATGAAAGATCCCGTCATTGTCTCCACGGGACAGACCTATGAACGTACTTTCATTGAGAAGTGGCTGGCAGACGGACACTCAACATGCCCAAAAACTCAACAAGTCCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTTATTGCTCAATGGTGTGAGACCAATGGGATTGAACTACCACAACGTTCCAGCAGTTCTCAGCCCAGTGAATTCATGACTCCTGCTGAACGCTCCAAGTATGAAACTCTACTTCACAAACTCACATCAAGTAACATTGAAGACAAGCGATCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAGCGCAATGCCAGTAATCGGGTGGCCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTCGGCCTCCTTTCAACAACGGACCCCCTCACTCAAGAACATGCTGTGACAGCATTGCTTAACCTTTCAATTTGTGACAATAATAAGAGAAGTATCATGTCCTGTAGGGCAGCACCTGCCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCAGCCACTCTTTTCAGCCTTTCTGTCGTAGATGAATATAAAATAACGATTGGCGCGTCGGGAGCCATTCCGCCACTTATTACCCTGCTCAATGAAGGTACTCAAAGAGGAAAGAAGGACGCTGCAACTGCTCTTTTCAACTTGTGTTTCTACCAAGGGAACAAAGTAAAGGCAGTCAGGGGTGGTGTTGTTTCCATACTGATGCAGCTGTTGACAGAATCTAGAATAGGGATGGTAGATGAGGCCCTGGCAATTTTAGCCATACTTGCCAGCAATTCTGAAGGACGGGCTGCCATTGGAGCAGCCGATTCTGTCCCCGTTTTAGTAGATTTCATTGCAACAGGATCCCCTAGGAACAGGGAGAATGCAGCTGCAGTTTTGGTGCATCTTTGTGCAGGAGACAAGCGACATCTGGTGGAAGCGAAGGAGCTCGGAGTGATTAGTTTGCTTATAGATTTGGCAGAAAATGGCACAGACAGAGGTAAGCGAAAAGCGACACAATTGCTCGACCAAATAAACAGGTTTACAGAGCAGCAGAAAGAGGCTGAGGCTCAATCTCAGATCCCCCTGTTGCTGCCACCACCTTCCGCAATCGGCAACGTCGAAAGCTGA | 1977 | 46.08 | MGEENNGGSFRSLINLVNDVASISDYRYAVKKQYCNLARRLKLLIPMFEEMRDMKQALPDDTVRALASLKEALESTKELLRLGSEGSKICLALDREQILNQFHEVTARLEQALNEISHEDLDISDEVKEQVELVLSQFKRAKGRIDTQDAEMYDNLNSLYNNSKDSASDPSVLKGLAEKLQLMDIADLTQESLALHEMVSASDGDPGGRFEKMSILLKKIKDFMLTENPEIGVPSKEQSHPRTGGQVTVGKKDLASLEIPEDFRCPISLDLMKDPVIVSTGQTYERTFIEKWLADGHSTCPKTQQVLTSKILTPNYVLRSLIAQWCETNGIELPQRSSSSQPSEFMTPAERSKYETLLHKLTSSNIEDKRSAAGEIRLLAKRNASNRVAIAEAGAIPLLVGLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPAIVHVLKWGSMEARENAAATLFSLSVVDEYKITIGASGAIPPLITLLNEGTQRGKKDAATALFNLCFYQGNKVKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAADSVPVLVDFIATGSPRNRENAAAVLVHLCAGDKRHLVEAKELGVISLLIDLAENGTDRGKRKATQLLDQINRFTEQQKEAEAQSQIPLLLPPPSAIGNVES | 658 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2751092 | 2755896 | - | Tan0012459.2 | Tan05g0378 | 751686 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g0378 | 658 | PANTHER | U BOX DOMAIN-CONTAINING | 30 | 628 | - | - | |
Tan05g0378 | 658 | CDD | MLKL_NTD | 31 | 139 | - | - | |
Tan05g0378 | 658 | SMART | arm_5 | 465 | 505 | IPR000225 | GO:0005515(InterPro) | |
Tan05g0378 | 658 | SMART | arm_5 | 424 | 464 | IPR000225 | GO:0005515(InterPro) | |
Tan05g0378 | 658 | SMART | arm_5 | 589 | 629 | IPR000225 | GO:0005515(InterPro) | |
Tan05g0378 | 658 | SMART | arm_5 | 547 | 587 | IPR000225 | GO:0005515(InterPro) | |
Tan05g0378 | 658 | SMART | arm_5 | 383 | 423 | IPR000225 | GO:0005515(InterPro) | |
Tan05g0378 | 658 | SMART | arm_5 | 506 | 546 | IPR000225 | GO:0005515(InterPro) | |
Tan05g0378 | 658 | FunFam | RING-type E3 ubiquitin transferase | 7 | 119 | - | - | |
Tan05g0378 | 658 | FunFam | RING-type E3 ubiquitin transferase | 337 | 634 | - | - | |
Tan05g0378 | 658 | Coils | Coil | 620 | 640 | - | - | |
Tan05g0378 | 658 | SMART | Ubox_2 | 262 | 325 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan05g0378 | 658 | SUPERFAMILY | ARM repeat | 355 | 646 | IPR016024 | - | |
Tan05g0378 | 658 | Coils | Coil | 95 | 115 | - | - | |
Tan05g0378 | 658 | Pfam | Armadillo/beta-catenin-like repeat | 466 | 504 | IPR000225 | GO:0005515(InterPro) | |
Tan05g0378 | 658 | Pfam | Armadillo/beta-catenin-like repeat | 384 | 422 | IPR000225 | GO:0005515(InterPro) | |
Tan05g0378 | 658 | Pfam | Mixed lineage kinase domain-like N-terminal domain | 29 | 118 | IPR054000 | - | |
Tan05g0378 | 658 | Gene3D | - | 9 | 119 | IPR036537 | GO:0007166(InterPro) | |
Tan05g0378 | 658 | CDD | RING-Ubox_PUB | 260 | 312 | IPR045210 | - | |
Tan05g0378 | 658 | Pfam | U-box domain | 259 | 329 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan05g0378 | 658 | SUPERFAMILY | RING/U-box | 253 | 334 | - | - | |
Tan05g0378 | 658 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 394 | 432 | IPR000225 | GO:0005515(InterPro) | |
Tan05g0378 | 658 | Gene3D | - | 338 | 490 | IPR011989 | - | |
Tan05g0378 | 658 | Gene3D | - | 493 | 649 | IPR011989 | - | |
Tan05g0378 | 658 | ProSiteProfiles | U-box domain profile. | 258 | 332 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Tan05g0378 | 658 | FunFam | RING-type E3 ubiquitin transferase | 256 | 332 | - | - | |
Tan05g0378 | 658 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 332 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g2462 | Tan-Chr1:31419204 | Tan05g0378 | Tan-Chr5:2751092 | 1.10E-169 | dispersed | |
Tan03g2242 | Tan-Chr3:76767479 | Tan05g0378 | Tan-Chr5:2751092 | 6.30E-15 | dispersed | |
Tan04g0628 | Tan-Chr4:5304952 | Tan05g0378 | Tan-Chr5:2751092 | 4.60E-125 | dispersed | |
Tan05g0378 | Tan-Chr5:2751092 | Tan05g1058 | Tan-Chr5:8918421 | 5.00E-74 | dispersed | |
Tan05g0377 | Tan-Chr5:2751092 | Tan05g0378 | Tan-Chr5:2751092 | 8.30E-303 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g0378 | K27628 | - | csv:101221150 | 1100.89 |