Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0384 ATGGCAGAAGGGGAGGATATTCAGCCACTTGTCTGCGACAATGGAACAGGAATGGTTAAGGCTGGCTTTGCTGGAGATGATGCTCCAAGGGCCGTGTTTCCTAGTATAGTAGGTCGACCAAGGCATACCGGTGTGATGGTTGGCATGGGCCAAAAGGATGCGTATGTTGGGGATGAAGCTCAGTCCAAACGTGGTATATTAACTTTGAAATATCCCATAGAGCATGGTATAGTGAGCAATTGGGATGACATGGAGAAAATTTGGCATCATACCTTCTACAATGAACTCCGAGTGGCTCCTGAAGAGCACCCTGTCCTACTCACTGAAGCCCCTCTGAATCCAAAGGCAAATCGTGAAAAAATGACCCAAATCATGTTCGAGACCTTCAACGCTCCTGCCATGTATGTTGCCATTCAGGCCGTTCTTTCCCTCTACGCTAGTGGACGCACAACTGGTATTGTTTTGGATTCTGGAGATGGTGTCAGTCACACTGTCCCAATTTACGAGGGGTATGCTCTCCCCCATGCCATACTTCGTCTTGACCTCGCTGGCCGTGACCTCACTGATGCCCTTATGAAAATCTTGACTGAACGTGGGTATTCCTTCACCACCACAGCTGAGCGTGAAATTGTGAGGGACGTGAAGGAAAAACTGGCATATATTGCCCTTGACTTCGAGCAAGAACTTGAAACTTCCAAAACTGGTTCATCTGTTGAGAAGAGTTATGAACTTCCAGATGGGCAGGTTATCACAATTGGCGCAGAACGTTTCCGATGTCCTGAAGTTCTTTTCCAGCCTTCAATGATCGGAATGGAAGCTGCAGGCATCCATGAAACAACATATAACTCCATCATGAAATGTGATGTTGATATCAGGAAGGATCTGTATGGAAATATTGTTCTTAGTGGTGGATCAACCATGTTCCCAGGCATTGCTGACAGAATGAGCAAAGAAATAACTGCATTAGCCCCTAGCAGCATGAAAATTAAGGTGGTAGCTCCACCTGAAAGAAAGTACAGTGTCTGGATCGGTGGCTCCATTTTGGCATCCCTCAGCACATTTCAGCAGGTACACGACTTTTAG 1083 46.54 MAEGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDFEQELETSKTGSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVHDF 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2796238 2798771 + Tan0021601.2 Tan05g0384 751692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0384 360 FunFam Actin, muscle 182 273 - -
Tan05g0384 360 Gene3D - 140 340 - -
Tan05g0384 360 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Tan05g0384 360 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Tan05g0384 360 Gene3D Actin; Chain A, domain 4 182 273 - -
Tan05g0384 360 SUPERFAMILY Actin-like ATPase domain 149 357 IPR043129 -
Tan05g0384 360 PANTHER ACTIN 8 354 IPR004000 GO:0005737(PANTHER)
Tan05g0384 360 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Tan05g0384 360 PRINTS Actin signature 28 37 IPR004000 -
Tan05g0384 360 PRINTS Actin signature 63 85 IPR004000 -
Tan05g0384 360 PRINTS Actin signature 142 161 IPR004000 -
Tan05g0384 360 PRINTS Actin signature 238 254 IPR004000 -
Tan05g0384 360 PRINTS Actin signature 117 130 IPR004000 -
Tan05g0384 360 PRINTS Actin signature 51 62 IPR004000 -
Tan05g0384 360 FunFam Actin, alpha skeletal muscle 3 178 - -
Tan05g0384 360 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Tan05g0384 360 Gene3D - 10 357 - -
Tan05g0384 360 FunFam Major actin 259 340 - -
Tan05g0384 360 SMART actin_3 7 360 IPR004000 -
Tan05g0384 360 Pfam Actin 5 357 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0384 Tan-Chr5:2796238 Tan08g1503 Tan-Chr8:62355528 5.90E-202 dispersed
Tan05g0383 Tan-Chr5:2796238 Tan05g0384 Tan-Chr5:2796238 2.70E-205 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0384 K10355 - csv:101214246 704.131