Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0390 ATGGGTAACGGGATTGGGAAGCTCGGCGTTTGCTTCACCGGACTTAGCGACGGTCGGCGGCGGCCAGATATTTCCGTTCTGCTATCGAATCCACTCGATGAAGGGCTTGGCCACTCGTTCTGCTATGTTCGGCCTGATCCTTTGATGCTTTCGTCTTCAAAAGTTCATTCGGAAGAAACCACCACTTTCCGATCAATTTCCGGCGCCTCTGTAAGTGCCAATACATCGACGCCTCTTTCTACTGCTCTTGTTGATCTGTATTCGTACAATAGCATTGATCGAGCGGCGGCTTTTGAGAGTTCGACTTCTTTCGCTTCAATCCCTTTGCAGCCGATCCCTAGAAACATGATCAATTCGGGTCCGATTCCGGGTAATTTCAGTGGAATCCCCTGTTCGGGTCCTTTGGAAAGAGGGTTTCTATCGGGTCCGATTGAGCGAGGGTTTATGTCGGGTCCATTGGATCGGGGGATTTTTTCGGGTCCTCTTGATAATTCTGCATCTAGTGAGTTTCAGAGAAGTTTCTCTCATGGAGGAGGATTTAATTCCAGATCTAGATCGAGAAAAAGCCGGTTAATTCGGATTCTAAGAAGCGCAATTTCGAAGTCGATTTATCGAGGGCAAAATTCCATTGTGGCTCCGATTAAAGCGGTTAAAGAACCCGATTGGATCGTCATGTCCGAGAAGCATAATGAGAATTTGACTGTGAGTAGTTTGAATTTCAGTAGCGAGGGAAGTTTGGAGGATGATGATTCCATGGAGAGCCAAAATCTGCAGTGGGCTCAAGGAAAAGCAGGGGAAGATCGAGTTCATGTTGTGGTTTCTGAAGAACATGGCTGGGTTTTCGTTGGGATTTATGATGGATTTAACGGTCCCGATGCTCCTGATTATCTTTTGTCGAATTTGTACTCATCTGTTCATAAAGAGCTCAAAGGTTTGTTATGGGATGAAAAGCTGGATTCGGCCGGTGTTGCCGCTCCGGCCACTTCCCCTGTTCGATCTGAGAATTTTTGTTCAGAAACAAGAAATTCTTCGCAGGTTAATGACAGTGATTTGGAGAGGAATGGGGTGAGTGATGCTTGTTCTCAGTGTGTTGAACAAGAGAATCATCCTTGTGCTAGTGGAGATGGGAACTCTGGATCGAATTCGAGGAGAAGGAAAAGTAAGAATTCAAGAGGAAAGTTTAGAGGAGCTGCTGAGAAGTGGGAGGATAATCAGCGGCGGTGGAAGTGCGAATGGGACCGGGAACGATTAGAGCTCGATCGGAGGTTAAAGGAGCAGTTGAATCGATCTGGGTCACATGGTTCGAGGTCGATCAATCATTCGGATGTTTTGAAAGCTCTGTCCCAGGCATTAAAGAAAACAGAGGAGGCCTATTTGGATATTGCAGACAAGATGCTTGATGAAAATCCTGAACTGGCTTTGATGGGCTCTTGTGTGCTTGTGATGCTTATGAAGGGAGATGATGTCTATGTGATGAATGTTGGCGACAGCCGAGCTGTTTTAGCACAGAAGGCGGAGCCTGATTATTGGCTCGGGAAGGTTCGACAGGACTTGGAAAGGATTAATGAAGAGCCAGTTCATGACATTGAAGCATTAGATGGTGATAGAGCATTCACCTCAGCTAACCTTACTGCTTTTCAACTTTCCATGGATCACAGCACCAGTGTTGATGAGGAAGTTCAGAGAATTAAAAATGAACACCCTGATGATGCTGGTGCCGTGATGAACGACCGTGTGAAAGGCTCGTTGAAGGTTACTCGGGCGTTTGGTGCTGGTTTCCTGAAACAGCCTAAATGGAACAATGCACTATTGGAGATGTTCAGAATCGACTACGTCGGGAGATCGCCATACATTAATTGTCTACCATCTCTCTACCACCACAGATTGGGACCAAAAGACAGGTTTTTGATACTATCATCTGATGGACTTTACCAGTACTTCACAAACGAGGAAGCTATTTCTGAAGTCGAACTTTTCATCACATTGCAACCCGAAGGAGACCCGGCTCAACATCTGGTTGAACTACTGCTGTTTCGGGCTGCAAAGCGAGCTGGTATGGATTTCCACGAGTTACTCGAAATACCACAGGGCGACCGGAGGAAGTACCACGACGATGTATCCATCATTGTAATTTCATTAGAAGGGAGGATCTGGAGATCCTGTGTATAA 2169 46.24 MGNGIGKLGVCFTGLSDGRRRPDISVLLSNPLDEGLGHSFCYVRPDPLMLSSSKVHSEETTTFRSISGASVSANTSTPLSTALVDLYSYNSIDRAAAFESSTSFASIPLQPIPRNMINSGPIPGNFSGIPCSGPLERGFLSGPIERGFMSGPLDRGIFSGPLDNSASSEFQRSFSHGGGFNSRSRSRKSRLIRILRSAISKSIYRGQNSIVAPIKAVKEPDWIVMSEKHNENLTVSSLNFSSEGSLEDDDSMESQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYSSVHKELKGLLWDEKLDSAGVAAPATSPVRSENFCSETRNSSQVNDSDLERNGVSDACSQCVEQENHPCASGDGNSGSNSRRRKSKNSRGKFRGAAEKWEDNQRRWKCEWDRERLELDRRLKEQLNRSGSHGSRSINHSDVLKALSQALKKTEEAYLDIADKMLDENPELALMGSCVLVMLMKGDDVYVMNVGDSRAVLAQKAEPDYWLGKVRQDLERINEEPVHDIEALDGDRAFTSANLTAFQLSMDHSTSVDEEVQRIKNEHPDDAGAVMNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGRSPYINCLPSLYHHRLGPKDRFLILSSDGLYQYFTNEEAISEVELFITLQPEGDPAQHLVELLLFRAAKRAGMDFHELLEIPQGDRRKYHDDVSIIVISLEGRIWRSCV 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2812307 2815858 - Tan0018687.1 Tan05g0390 751698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0390 722 Coils Coil 444 464 - -
Tan05g0390 722 PANTHER PROTEIN PHOSPHATASE 2C 239 713 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Tan05g0390 722 SMART PP2C_4 250 711 IPR001932 -
Tan05g0390 722 SUPERFAMILY PP2C-like 263 714 IPR036457 -
Tan05g0390 722 MobiDBLite consensus disorder prediction 367 398 - -
Tan05g0390 722 MobiDBLite consensus disorder prediction 325 353 - -
Tan05g0390 722 MobiDBLite consensus disorder prediction 331 353 - -
Tan05g0390 722 ProSiteProfiles PPM-type phosphatase domain profile. 249 713 IPR001932 -
Tan05g0390 722 Pfam Protein phosphatase 2C 542 663 IPR001932 -
Tan05g0390 722 Pfam Protein phosphatase 2C 437 506 IPR001932 -
Tan05g0390 722 CDD PP2Cc 439 713 IPR001932 -
Tan05g0390 722 Gene3D - 227 718 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0950 Tan-Chr3:65987928 Tan05g0390 Tan-Chr5:2812307 4.30E-133 dispersed
Tan05g0390 Tan-Chr5:2812307 Tan10g1000 Tan-Chr10:8824062 7.00E-61 dispersed
Tan05g0390 Tan-Chr5:2812307 Tan05g0391 Tan-Chr5:2812307 0.00E+00 tandem
Tan01g2165 Tan-Chr1:25277894 Tan05g0390 Tan-Chr5:2812307 9.00E-134 transposed
Tan03g0949 Tan-Chr3:65987928 Tan05g0390 Tan-Chr5:2812307 2.10E-195 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0390 - - - 0.0