Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0412 ATGGCATCCATTATTTCTCTCTGCATTGCTTCTCTTCTCCCTTTTTTCTTACTCGCTGAAGCTAGAATCCCCGGGGTTTACTCCGGCGGCGCCTGGCAGAACGCTCACGCCACCTTCTACGGCGGCGCCGACGCTTCCGGCACCATGGGCGGAGCTTGTGGGTACGGGAATTTATACAGCCAAGGGTATGGAGTGAGCACGGCGGCGCTGAGTACGGCTCTGTTCAACAAAGGGCAGAGCTGTGGCGCTTGCTTTGAGATTAAATGTGCTAATGACCCGAAGTGGTGCCATTCCGGTAGCCCGTCGATTTTGATTACTGCTACTAATTTCTGCCCGCCGAACTATGCTCTGCCCAACGACAATGGCGGCTGGTGCAACCCTCCTCGGACTCACTTCGATCTCGCCATGCCCATGTTCCTTAAAATTGCCGAGTACCGCGCCGGAATCGTCCCCGTCGCTTACCGCCGAGTGCCATGCCGGAAGCAGGGAGGAATCAGGTTTACAATCAACGGGTTCCGTTACTTCAACCTAGTTCTAATCACCAACGTCGCGGGTGCAGGGGATATCGTGCGGGTTAGCGTGAAAGGATCAAGGACTGGCTGGATGAGCATGACAAGAAACTGGGGGCAAAATTGGCAATCCAACGCCGTGTTGGTGGGCCAGGCTCTGTCGTTTAGAGTGACGGGCAGTGACCGACGAACCTCCACGTCATGGAACATCGTGCCCGCCAATTGGCAGTTCGGCCAAACTTTCACCGGGAAAAACTTCCGTGTTTAA 777 55.21 MASIISLCIASLLPFFLLAEARIPGVYSGGAWQNAHATFYGGADASGTMGGACGYGNLYSQGYGVSTAALSTALFNKGQSCGACFEIKCANDPKWCHSGSPSILITATNFCPPNYALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSRTGWMSMTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPANWQFGQTFTGKNFRV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2890306 2892179 - Tan0004425.1 Tan05g0412 751720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0412 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Tan05g0412 258 Gene3D - 164 256 IPR036749 -
Tan05g0412 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576(InterPro)
Tan05g0412 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Tan05g0412 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576(InterPro)
Tan05g0412 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Tan05g0412 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576(InterPro)
Tan05g0412 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576(InterPro)
Tan05g0412 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Tan05g0412 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Tan05g0412 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Tan05g0412 258 FunFam Expansin 21 160 - -
Tan05g0412 258 SMART dpbb_1 67 154 IPR007112 -
Tan05g0412 258 CDD DPBB_EXPA_N 32 159 - -
Tan05g0412 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Tan05g0412 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664(InterPro)
Tan05g0412 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664(InterPro)
Tan05g0412 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Tan05g0412 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664(InterPro)
Tan05g0412 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664(InterPro)
Tan05g0412 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Tan05g0412 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664(InterPro)
Tan05g0412 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Tan05g0412 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664(InterPro)
Tan05g0412 258 Gene3D - 19 160 IPR036908 -
Tan05g0412 258 FunFam Expansin 164 256 - -
Tan05g0412 258 PANTHER EXPANSIN-A15 20 256 IPR002963 GO:0009664(InterPro)
Tan05g0412 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0946 Tan-Chr3:65909605 Tan05g0412 Tan-Chr5:2890306 1.20E-136 dispersed
Tan04g0284 Tan-Chr4:2328711 Tan05g0412 Tan-Chr5:2890306 2.20E-134 dispersed
Tan04g1788 Tan-Chr4:52479660 Tan05g0412 Tan-Chr5:2890306 9.80E-77 dispersed
Tan04g1815 Tan-Chr4:55227430 Tan05g0412 Tan-Chr5:2890306 2.80E-76 dispersed
Tan05g0412 Tan-Chr5:2890306 Tan11g0699 Tan-Chr11:6079714 3.70E-121 dispersed
Tan02g0543 Tan-Chr2:4877190 Tan05g0412 Tan-Chr5:2890306 4.30E-74 transposed
Tan01g2437 Tan-Chr1:30691827 Tan05g0412 Tan-Chr5:2890306 1.10E-133 wgd
Tan03g0945 Tan-Chr3:65909605 Tan05g0412 Tan-Chr5:2890306 4.60E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0412 - - - 0.0