Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan05g0461 | ATGAAGCGCTGCCGAAGCAAAGAAGAAAGACATGAAGAAGAAGGCACGCAAGGTTCAACGAAGAAAGCTAAAACTAGGGCAGAGAAGAAAGCCATTAGCGAGGGGAACACGTTTGATGATGGCTTTCCAAAATTACATAGTTCACCTAGTGCCAAACCAGATTGGAATCCTAAAGATAATGAACATATAAAAACAGCAAAAGAAGTGTTGCACGTATCAACAACCCCAACTACAATTATGTGCCGTGAGGATGAACAAAGTAGAATCCTCAATTTTTGCAAGTCTCGTGTGGAGCAAGAAAAAGCTGGTAGTTTGTATGTTTGCGGATGTCCAGGAACGGGCAAATCTTTGTCCATGGAGAAAGTGAAAAAACAGTTAGCTACTTGGGTGAAAGAGTCAGGTCTTCAGCTGCCATATATTTTGTCCATAAATTGCACTTCGTTAGCAAATACATCCGATATTTTCATTAAGATGATGGGCGAAGCCCAACCTCAAAAGAAAAGGAACAGCTCTTTAACACCCTTGCAACATCTTCAACGCCTATACTCCCAAAAGGCAGAGTCATCTTGCATGAAGATGATGTTGATAATAGCTGATGAATTGGATTATTTAATTACAAAGGATAAAGTAGTGCTTCATGATCTGTTCATGCTCACAACTTTTCCATTTTCAAGATGTATTTTGATAGGAATTGCGAATGCTATTGACTTAGCAGATCGCTTTCTTCCAAGACTTCAAGCATTGAATTGCAAACCCCAGGTCATAACTTATAAGGCTTATTCAAAGGATCAGATCCTCAAGATTCTTCAGCAAAGGTTAACTGTGCTTCCTTTCGTTTTCTTTCAACCGCAAGCACTGGAGCTCTGTGCTAGGAAAGTTGCAGCTGTGTCTGGAGATATGAGAAAAGCTCTTTGCGTTTGCAGAAATGCCATTGAGTTGTTAGAGGTGGAACTCAAAGCATCCTGTAAGGAGCTGAACCATAACGACGGGTGTGACTCTCCAGCACCTGAGTTTGTCAAAAGACAAGAGACTCATATTGTGAGGTTGGACCATATGGCTGTTGCCTTATCCAAGACTTTTAAATCACCAGCAGTGGAAACCATACAATCTCTTCCTCAACATCAACAGATTATTTTATGCTCTGTTGTAAAACTCGTTCGTCAAGGGAAGAAGGATACAACCATAGGAGAGCTAAACAAATCATACATAGATATCTGCAAATCAACACTAATCCCACCGGTGGGAACTTTGGAACTTTCAACTATGTTCACAGTGCTAAACGACCAGGTAGTAGCCCAAACAAAGAATTTGACATTCATCTCTGATGGTACCAATTCTTCAAACATTTTGACATTGAACTTTGCAGGGCCTTCTCAAACTTGGTCAGTCTCGAGATGA | 1398 | 40.63 | MKRCRSKEERHEEEGTQGSTKKAKTRAEKKAISEGNTFDDGFPKLHSSPSAKPDWNPKDNEHIKTAKEVLHVSTTPTTIMCREDEQSRILNFCKSRVEQEKAGSLYVCGCPGTGKSLSMEKVKKQLATWVKESGLQLPYILSINCTSLANTSDIFIKMMGEAQPQKKRNSSLTPLQHLQRLYSQKAESSCMKMMLIIADELDYLITKDKVVLHDLFMLTTFPFSRCILIGIANAIDLADRFLPRLQALNCKPQVITYKAYSKDQILKILQQRLTVLPFVFFQPQALELCARKVAAVSGDMRKALCVCRNAIELLEVELKASCKELNHNDGCDSPAPEFVKRQETHIVRLDHMAVALSKTFKSPAVETIQSLPQHQQIILCSVVKLVRQGKKDTTIGELNKSYIDICKSTLIPPVGTLELSTMFTVLNDQVVAQTKNLTFISDGTNSSNILTLNFAGPSQTWSVSR | 465 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 3185471 | 3191852 | + | Tan0009347.3 | Tan05g0461 | 751769 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan05g0461 | 465 | Pfam | AAA domain | 101 | 221 | IPR049945 | GO:0016887(InterPro) | |
| Tan05g0461 | 465 | Gene3D | - | 253 | 342 | - | - | |
| Tan05g0461 | 465 | Gene3D | - | 58 | 252 | IPR027417 | - | |
| Tan05g0461 | 465 | FunFam | Cell division control protein | 60 | 248 | - | - | |
| Tan05g0461 | 465 | PIRSF | Cdc6 | 1 | 457 | IPR016314 | GO:0006270(InterPro)|GO:0051301(InterPro) | |
| Tan05g0461 | 465 | Pfam | CDC6, C terminal winged helix domain | 366 | 435 | IPR015163 | - | |
| Tan05g0461 | 465 | CDD | AAA | 85 | 245 | - | - | |
| Tan05g0461 | 465 | PANTHER | CELL DIVISION CONTROL PROTEIN 6-RELATED | 16 | 436 | IPR050311 | GO:0003688(PANTHER)|GO:0005634(PANTHER)|GO:0033314(PANTHER) | |
| Tan05g0461 | 465 | Pfam | Cdc6/ORC-like, ATPase lid domain | 260 | 317 | IPR054425 | - | |
| Tan05g0461 | 465 | SMART | AAA_5 | 101 | 251 | IPR003593 | GO:0016887(InterPro) | |
| Tan05g0461 | 465 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
| Tan05g0461 | 465 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 67 | 317 | IPR027417 | - | |
| Tan05g0461 | 465 | Gene3D | - | 364 | 438 | IPR036388 | - | |
| Tan05g0461 | 465 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Tan05g0461 | 465 | SUPERFAMILY | Winged helix DNA-binding domain | 365 | 429 | IPR036390 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan05g0459 | Tan-Chr5:3185471 | Tan05g0461 | Tan-Chr5:3185471 | 1.90E-245 | dispersed | |
| Tan05g0461 | Tan-Chr5:3185471 | Tan11g0841 | Tan-Chr11:6910401 | 3.20E-208 | dispersed | |
| Tan05g0460 | Tan-Chr5:3185471 | Tan05g0461 | Tan-Chr5:3185471 | 1.90E-245 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan05g0461 | K02213 | - | csv:101205741 | 661.759 |