Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0488 ATGATGTGCAATGGTTGCAATAGGAAATCTGCAAGCCCTAACTTCATGATGGACGGTTGTAATAGAAATTTGGGGTTTTGTATCTCGGTTTTGCTTGAATTTTCGGCTACAGATGACCTGATTGGATTTAGGAGTGCTGTTGAGGAAGATGGTCGTGATATTGATGAAGTGAGTTTGTGGTATGGAAGAATTTTTGGTTCAAAAAAGATGGGATATGAAGAAAGGACCCCTCTTATGGTTTCAGCCATGTTTGGGAGCTTGAACGTCCTTTCTTATATCGTTCACAGTGGTCGTGTCGATGTTAATCGGGCTTGTGGTTCGGATGGCGCAACTGCTCTCCATTGTGCGGTTGCTGGTGGTTCTGCTGTTTCAGATCAAGTTGTCAAACTCTTGCTTGATGCTTCTGCTGATATGAACGCTGTTGATGCAAATGGTTACCGTCCTGGTGACTTGATTGCTCCTGATTTTACTTTAGCCTCTTCCTATTTGAGGAAAAAGGCGATACAACAATTGCTAAAGGGTTGTGGTGACAACGAAGAAGTCCTTGGTTCATCTGAGGCGATATTTTACGAGAGAGAAACGCATGAGCCACAGGAGCTTTCAACGCCTCGGGTTTCAAGAGATGGAACAGAGAAGAAAGAGTATCCAGTTGATCTCTCACTTCCAGACATCAAGAATGGAATCTATAGCACAGATGAGTTTAGAATGTATACTTTTAAGATCAAACCTTGTACAAGAGCTTACTCTCATGATTGGACAGAGTGTCCATTTGTTCACCCTGGGGAAAACGCAAGGAGGCGGGATCTGAGGAAATACCATTACAGCTGTGTCCCGTGTCCCGAATTCAGAAAGGGCACATGTAGGCAGGGGGATGCCTGTGAATATGCTCATGGAATTTTTGAATGCTGGCTCCATCCTGCTCAATACCGTACCCGTCTTTGCAAGGATGAAACTGGATGCACCAGAAAAGTCTGTTTCTTTGCTCACAAGCCGGAGGAGCTCCGCCCCTTGTACGCTTCAAACGGTTGTGATGTACTGTCTCCAAGATCAATTTGTGGTTCTTCACTGGACATTGCATCAATCAGCCCGCTTACCCTTGGTTCTCCTTCAGCTCTAGTACCTCCTTCATCAACTCCGCCCATGACTCCTGGAATTTCTTCTCCGATGGGTGGAACCATGTGGCAGACTCAATGTAGTATTGCGCCTCCGACCTTGCAGCTTCCGGGTAGCAGGTTGAAGGCTGCTTTGAGCGTGAGAGACATGGATTTAGATGCCGAGTTACTTAGTCTCGAAAGTCAGCGCCGTAGACAGCAACAGTTAATGGATGAGATGTCCTGTCTGCCTTCCCCTTCCAGATGGAACAATGGCCTATCAACCCCTGCATCTTTTCCATCCCCAAGGAGTAGAAATGGAGAATTGAATGGGCTTGGAGGTATGAAACCTACTAACCTCGAGGACATTTTTGGGTCCGTAGATCCTGCACTCTTGCCTCAATTGCAAGGACTTTCGCTGGATTCTGGGGGATCTCAGGTACAATCCCCTTCTGGGATTCAGATGCGCCAAAGCCTGAATCAGTCTTTCCTCTCGAGCTATGCTAACAGCATTGGATCCCCTCCTGCAAGGTCGTCTCAACCATTTAGCATCGACTCATCTGCGTCTGCTGCAGCAAGCGTTCTGAGTTCCAGGGCAGCTGCGTTTGCTAAGCGGAGCCAGAGCTTTGTCGTACGTAGTGTGGCGAACCGTCATTCTGGATTTTCACTCCCAGCTACATCTGCAATGCCTTTGAACTTCCCAGACTGGGGTTCGCCTGACGGTAAACTAGACTGGGGAATTCATGGGGAAGAACTCAACAAATTAAGGAAGTCAGCATCGTTTGGGCGTCGAAGTAGTTCTCTAGCCACATCCACAATGCACGCTGCCGTTGCCGTTGCCGAGCCAGATGTTTCCTGGGTTCAGTCCCTGGTGAAGGATGCTCCGACCGAGAAACCCGTGCAGTTGAGTATGGACGAGCAGCAGCAACAGCAGCTGTGTCATCTCGACAACGGCGATTCAAAGCAAATGTACATGGAACAGGAGCAGTTGGTTGCCTAA 2091 47.92 MMCNGCNRKSASPNFMMDGCNRNLGFCISVLLEFSATDDLIGFRSAVEEDGRDIDEVSLWYGRIFGSKKMGYEERTPLMVSAMFGSLNVLSYIVHSGRVDVNRACGSDGATALHCAVAGGSAVSDQVVKLLLDASADMNAVDANGYRPGDLIAPDFTLASSYLRKKAIQQLLKGCGDNEEVLGSSEAIFYERETHEPQELSTPRVSRDGTEKKEYPVDLSLPDIKNGIYSTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDLRKYHYSCVPCPEFRKGTCRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPLYASNGCDVLSPRSICGSSLDIASISPLTLGSPSALVPPSSTPPMTPGISSPMGGTMWQTQCSIAPPTLQLPGSRLKAALSVRDMDLDAELLSLESQRRRQQQLMDEMSCLPSPSRWNNGLSTPASFPSPRSRNGELNGLGGMKPTNLEDIFGSVDPALLPQLQGLSLDSGGSQVQSPSGIQMRQSLNQSFLSSYANSIGSPPARSSQPFSIDSSASAAASVLSSRAAAFAKRSQSFVVRSVANRHSGFSLPATSAMPLNFPDWGSPDGKLDWGIHGEELNKLRKSASFGRRSSSLATSTMHAAVAVAEPDVSWVQSLVKDAPTEKPVQLSMDEQQQQQLCHLDNGDSKQMYMEQEQLVA 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3363608 3366768 + Tan0019753.1 Tan05g0488 751796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0488 696 Gene3D - 36 172 IPR036770 -
Tan05g0488 696 PANTHER UNKEMPT FAMILY MEMBER 68 658 IPR045234 -
Tan05g0488 696 SMART c3hfinal6 308 331 IPR000571 GO:0046872(InterPro)
Tan05g0488 696 SMART c3hfinal6 273 299 IPR000571 GO:0046872(InterPro)
Tan05g0488 696 ProSiteProfiles Zinc finger C3H1-type profile. 278 300 IPR000571 GO:0046872(InterPro)
Tan05g0488 696 ProSiteProfiles Ankyrin repeat region circular profile. 108 142 - -
Tan05g0488 696 SUPERFAMILY Ankyrin repeat 70 148 IPR036770 -
Tan05g0488 696 Gene3D - 274 336 - -
Tan05g0488 696 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 298 IPR000571 GO:0046872(InterPro)
Tan05g0488 696 SMART ANK_2a 108 140 IPR002110 GO:0005515(InterPro)
Tan05g0488 696 SMART ANK_2a 73 103 IPR002110 GO:0005515(InterPro)
Tan05g0488 696 Pfam Ankyrin repeats (3 copies) 73 142 IPR002110 GO:0005515(InterPro)
Tan05g0488 696 FunFam Zinc finger CCCH domain-containing protein 66 231 299 - -
Tan05g0488 696 ProSiteProfiles Ankyrin repeat profile. 108 143 IPR002110 GO:0005515(InterPro)
Tan05g0488 696 MobiDBLite consensus disorder prediction 447 469 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1310 Tan-Chr4:13503662 Tan05g0488 Tan-Chr5:3363608 2.50E-201 dispersed
Tan05g0488 Tan-Chr5:3363608 Tan08g1420 Tan-Chr8:58019450 1.30E-133 dispersed
Tan05g0488 Tan-Chr5:3363608 Tan01g4650 Tan-Chr1:112358561 3.50E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27407 PF12796 Ank_2 1.80E-07 CL0465 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0488 - - - 0.0