Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan05g0519 ATGGGAGCTGGTTCATCGCCATGCGCATCCTGCAAATTGTTGCGGCGGCGGTGCGCAAAGGACTGTGTTTTTGCCCCTTATTTTCCTCCCGATGATCCTTACAAATTCGCCATTGTTCATAAGATCTTCGGCGCTAGCAATGTCAGCAAAATGTTGCAGGAGCTTCCATTGGATCAAAGAGCAGATGCGGTTAGCAGTATGGTATATGAAGCGAGCGCAAGAATGCGAGATCCAGTGTATGGTTGTGTTGGGGCAATCTCATTTCTACAGAATGAAGTGTCTCGATTAGAAATGCAACTGGCGGCGGCGCAAGCAGAGATATTAAGCTTTCAAATGCAACAACAGACAACTCCGATGACATTTCCAACTATGACGACTCAAATGGACGAATTATATGACGATCAAAATCTTGTTTTTCTCTCAAATGATGATTCTTCTAATTCCATCGATAGTTTTCAGATAGTGGAAGATTATTCTTCTCTATGGTCTTGA 492 43.5 MGAGSSPCASCKLLRRRCAKDCVFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQRADAVSSMVYEASARMRDPVYGCVGAISFLQNEVSRLEMQLAAAQAEILSFQMQQQTTPMTFPTMTTQMDELYDDQNLVFLSNDDSSNSIDSFQIVEDYSSLWS 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3585649 3586773 - Tan0011251.1 Tan05g0519 751827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan05g0519 163 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Tan05g0519 163 Coils Coil 86 113 - -
Tan05g0519 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 126 - -
Tan05g0519 163 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1350 Tan-Chr4:14554010 Tan05g0519 Tan-Chr5:3585649 6.30E-50 dispersed
Tan05g0519 Tan-Chr5:3585649 Tan05g2776 Tan-Chr5:79905354 2.80E-42 dispersed
Tan05g0519 Tan-Chr5:3585649 Tan05g0608 Tan-Chr5:4443176 4.30E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
27411 PF03195 LOB 4.70E-40 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan05g0519 - - - 0.0