Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan05g0519 | ATGGGAGCTGGTTCATCGCCATGCGCATCCTGCAAATTGTTGCGGCGGCGGTGCGCAAAGGACTGTGTTTTTGCCCCTTATTTTCCTCCCGATGATCCTTACAAATTCGCCATTGTTCATAAGATCTTCGGCGCTAGCAATGTCAGCAAAATGTTGCAGGAGCTTCCATTGGATCAAAGAGCAGATGCGGTTAGCAGTATGGTATATGAAGCGAGCGCAAGAATGCGAGATCCAGTGTATGGTTGTGTTGGGGCAATCTCATTTCTACAGAATGAAGTGTCTCGATTAGAAATGCAACTGGCGGCGGCGCAAGCAGAGATATTAAGCTTTCAAATGCAACAACAGACAACTCCGATGACATTTCCAACTATGACGACTCAAATGGACGAATTATATGACGATCAAAATCTTGTTTTTCTCTCAAATGATGATTCTTCTAATTCCATCGATAGTTTTCAGATAGTGGAAGATTATTCTTCTCTATGGTCTTGA | 492 | 43.5 | MGAGSSPCASCKLLRRRCAKDCVFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQRADAVSSMVYEASARMRDPVYGCVGAISFLQNEVSRLEMQLAAAQAEILSFQMQQQTTPMTFPTMTTQMDELYDDQNLVFLSNDDSSNSIDSFQIVEDYSSLWS | 163 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3585649 | 3586773 | - | Tan0011251.1 | Tan05g0519 | 751827 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan05g0519 | 163 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
Tan05g0519 | 163 | Coils | Coil | 86 | 113 | - | - | |
Tan05g0519 | 163 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 6 | 126 | - | - | |
Tan05g0519 | 163 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 104 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan04g1350 | Tan-Chr4:14554010 | Tan05g0519 | Tan-Chr5:3585649 | 6.30E-50 | dispersed | |
Tan05g0519 | Tan-Chr5:3585649 | Tan05g2776 | Tan-Chr5:79905354 | 2.80E-42 | dispersed | |
Tan05g0519 | Tan-Chr5:3585649 | Tan05g0608 | Tan-Chr5:4443176 | 4.30E-43 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
27411 | PF03195 | LOB | 4.70E-40 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan05g0519 | - | - | - | 0.0 |