Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan05g0530 | ATGGAGTTCTTCTTCTCCGCCGGTACCGTTGACGATCCCAATTCCCACAGCTACGGCCGCCGGAGGATGCCGGAGCATACAGCGCCGCCCATGTCTAAGCTCAATTCGACTCCAAATCCGCCATTGTTGCCGGACTTGCCTTCGCCCATTTTTTCTCCTTCTTCGTTCTTCACTATCCCTCCTGGGATCAGCCCCACCCAACTTCTTCATTCCCCTCTTCTTCTTAACTCTTCTAATATTCTGCCATCGCCGACCACCGGAGCAATTAGCGCCGGAGATTTGACCAGAAACAGTAACAATTCCGGCCACCACGAACAGAACATCAAACAAGAACACAACAACTTAGCTGAATTCTCATTTCCTCGTACATATCCCACAAAATCGTCAATGTTTCAATCGTCTTCAACGCTGCAAAATCAGGCATGGAGTTCTGAACCCGCCGCAAATTTCCCGCCGGAGACGGCCGTAAACGGCGGATTCAAATCGGAGCACCACCGACGATCCGAATCAAGAAACAGAGCATCGGACGACGGGTTTAACTGGAGAAAATACGGGCAAAAAGTGGTAAAAGGAAGTGAAAATCCGAGAAGCTATTACAAATGTACACACCCAAATTGCCCTGTAAGAAAGCAAGTTGAAAGATCATTAAATGGTCAAATTACAGAAATTGTTTACAAAAGTAAACACAATCATCCAAAACCAGAGTTCACAAGAAGATCATTATCAACTTCTTCTTCTTCTTCTTCTTCTTCATGGTTATCAGAAGCTTTACCTCAAACAATGGCTGCAGAGCCAAAGCATTCAATGGCCTCTGATTCCATTACGACGCCGGAGAACTCTTCAATTTCCATTGGGGACGATGATGATTCTGATGAAGCTGATGCAAAAAGATGGAAAAATGAGAGTGAGAATGAAATTTTATGTGGAGCAGGAGGGAAAACGGTGAGAGAACAGAGAGTTGTGGTTCAAACGATTAGTAATGTGGATAAATTAGACGATGGATATTGGTGGAGAAAATATGGACAGAAAGTAGTTAAGGGAAATCCAAATCCAAGGAGCTACTACAAGTGCACGTACGCAGGATGTGGAGTGAGAAAGCACATAGAGAGAGCGTCCCACGATTTAAGGGCTGTCATCACTACCTACGAAGGCAAGCACAACCACGAAATTCCGGCAGCCCGCGGCGGCGCCGGCGGCAGACCAGTACCCAGTAATCACAGCAGCGACAACAGCGGCGGCGACCGACGACCGAGTTCCGAGATCTCTGGTGGCGATAATGGATTCTCGAACATGTTGTGGAGGACCAAAGAAGAGACAGCCGATGACATTTTTCGGTCGTTATTAGACTGA | 1350 | 46.89 | MEFFFSAGTVDDPNSHSYGRRRMPEHTAPPMSKLNSTPNPPLLPDLPSPIFSPSSFFTIPPGISPTQLLHSPLLLNSSNILPSPTTGAISAGDLTRNSNNSGHHEQNIKQEHNNLAEFSFPRTYPTKSSMFQSSSTLQNQAWSSEPAANFPPETAVNGGFKSEHHRRSESRNRASDDGFNWRKYGQKVVKGSENPRSYYKCTHPNCPVRKQVERSLNGQITEIVYKSKHNHPKPEFTRRSLSTSSSSSSSSWLSEALPQTMAAEPKHSMASDSITTPENSSISIGDDDDSDEADAKRWKNESENEILCGAGGKTVREQRVVVQTISNVDKLDDGYWWRKYGQKVVKGNPNPRSYYKCTYAGCGVRKHIERASHDLRAVITTYEGKHNHEIPAARGGAGGRPVPSNHSSDNSGGDRRPSSEISGGDNGFSNMLWRTKEETADDIFRSLLD | 449 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 3678941 | 3685262 | - | Tan0001883.1 | Tan05g0530 | 751838 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan05g0530 | 449 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 145 | 216 | IPR044810 | GO:0003700(InterPro) | |
| Tan05g0530 | 449 | MobiDBLite | consensus disorder prediction | 128 | 147 | - | - | |
| Tan05g0530 | 449 | MobiDBLite | consensus disorder prediction | 128 | 179 | - | - | |
| Tan05g0530 | 449 | MobiDBLite | consensus disorder prediction | 86 | 104 | - | - | |
| Tan05g0530 | 449 | SUPERFAMILY | WRKY DNA-binding domain | 323 | 391 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan05g0530 | 449 | SMART | WRKY_cls | 175 | 233 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan05g0530 | 449 | SMART | WRKY_cls | 331 | 390 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan05g0530 | 449 | MobiDBLite | consensus disorder prediction | 403 | 433 | - | - | |
| Tan05g0530 | 449 | Gene3D | WRKY domain | 161 | 235 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan05g0530 | 449 | Gene3D | WRKY domain | 318 | 384 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan05g0530 | 449 | MobiDBLite | consensus disorder prediction | 386 | 433 | - | - | |
| Tan05g0530 | 449 | MobiDBLite | consensus disorder prediction | 159 | 179 | - | - | |
| Tan05g0530 | 449 | MobiDBLite | consensus disorder prediction | 224 | 299 | - | - | |
| Tan05g0530 | 449 | MobiDBLite | consensus disorder prediction | 269 | 283 | - | - | |
| Tan05g0530 | 449 | FunFam | WRKY transcription factor | 164 | 235 | - | - | |
| Tan05g0530 | 449 | Pfam | WRKY DNA -binding domain | 332 | 389 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan05g0530 | 449 | Pfam | WRKY DNA -binding domain | 176 | 232 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan05g0530 | 449 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
| Tan05g0530 | 449 | SUPERFAMILY | WRKY DNA-binding domain | 173 | 234 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan05g0530 | 449 | ProSiteProfiles | WRKY domain profile. | 326 | 391 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan05g0530 | 449 | MobiDBLite | consensus disorder prediction | 86 | 106 | - | - | |
| Tan05g0530 | 449 | ProSiteProfiles | WRKY domain profile. | 170 | 234 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Tan05g0530 | 449 | FunFam | WRKY transcription factor 57 | 317 | 391 | - | - | |
| Tan05g0530 | 449 | MobiDBLite | consensus disorder prediction | 237 | 257 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan05g0530 | Tan-Chr5:3678941 | Tan08g2202 | Tan-Chr8:73633887 | 1.60E-87 | dispersed | |
| Tan05g0530 | Tan-Chr5:3678941 | Tan08g2412 | Tan-Chr8:75363300 | 2.10E-87 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 27412 | PF03106 | WRKY | 3.40E-23 | CL0274 | Tan | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan05g0530 | K13424 | - | mdm:103447297 | 375.941 |